hmg20b (hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902)


Basic Information

Item Value
gene id hmg20b
gene name hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10716240 ~ 10720317 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223318.1
ctttatttccAGTCATGCGCAATGCAAACGAAGCACGTTGCCCTTCGCCCCGCCTACCCAAACCCACCAACCAATCAAAGCCACCAAGGAACTGTCAATCAAACCAACGTTTTTAGCTGGGCTAGCGTTTGAGTTAAGAAAACAGGCATTAATTTAGAATTGTCTGAATTCATGTAATGGGTGGCGTAAAGCAAGAGCAAACTGATGCTCCGGCATCTAAGGACTCTCAGCACATAGACACAGCACAAGAAGAGAATCAATCGACTTCCCAGCCAGTAAAGAAGCGAGGCTGGCCGAAagggaagaagagaaagaaggtGTTGCCAAACGGCCCCAAGGCTCCAGTTACTGGCTACGTGCGCTTCTTGAATGAGAGACGGGAACACATCCGGGCACTTCATCCTGATCTCCCCTTCCCAGAAATTACCAAGAGACTCGGAGCAGAATGGAGCCGTCTGGCTCCTCATGACAAACagCGCTATCTAGACGAAGCCGAAAGAGACAAAATGCAGTACGCACGAGAACTCAGGGAGTATCAAAAAAGTGAAGCTTACCAGATCACATGTGCAAAAGTTCAGGATAAGAGAATTAagagagAGGAGTTGACTTCTGTCATTATCAACGCCAACAGTTCAGGATCTGCAGGTTTTAAGAACTCGGACTTAACAGCCAGATTTGACGTCCCTATCTTCACAGAAGAATTTTTAGACCAAAACaaagCGCGAGAAGCAGAGCTGCGGCGACTGCGCAAGGCTAACGTGGAGTTCGAAGAGCAGAACTCGGTTCTCCAGAAGCACATTGCCGACATGTTCAGCGCTAAAGAGCGACTGGAGGCCGAGCTGGGCCAGGATGAGCTTCGCACGCAAGCTCTACAGCGCCACCTACAGGCCATCAAACAGACCCTGGTCAACAGCCTGGCCACTGTGCCTTTGCCAGgcaCAGGTGAGACGCCATCGATTGGAACGCTGGACTCGTACCTGAGTCGCTTGAGTAGTGCTTTAGAGAGCAGGCCTCATGAGCATCGCGCCTTAGTCATCAAGCTACAGGAGCTCTTGGCTCACCTAGACAGTGAGAAGCTTTGAAAACATGTCTACAGTTGCGGTGGATCTAAAAGTCCCAAGCATTGGGAAGACCCGGGATCGCCGTGCTCTACCTACGATTTCTCTGCCTTTCAGGATGTAATGGGCCATACGGTTTAATTGGATATTTTTTACTAGCCGATAAGCTAATTTGTAACACTGGTGCTGGCGGATTCTGAAGTCATTGACATgtgatataatgcattatattattgttgCTTTGACGGTTACAGCAGCTCGTTCAAAGACCAGGTCTGTTTAGAATCACGGAAAGCATGGTTTAAAGGCATGCtatgatttttacaaaataaaatcgtCTTTTACTGAAGTTGTAACGAAATGTAAAGTGCAGTGTTTTACATTGGGTGAGTATCGCACCATCAGTTTTACTCTAAACATTGAGTGACATTCCTAATCATcgttttctgaattaaaatccccgagtaatgtttgtttttgtttgcattccCTTTTGAACAAACTTTTAAGTCAGCTGGCATCGCAAAGGGTGATGATTTCTAGCATTAAAATATTCCGGGCGTCGAGAGTTAACACTGCTTTGGTGATGTACTTgaatgggtttatttttttttctttttgtatcaatcgttttaatatgaaaaaagataataaagtcttgaaagaattatta

Function

symbol description
hmg20b Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human HMG20B (high mobility group 20B).

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related-like isoform X3

GO: NA

KEGG:

id description
K24650 HMG20B; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223318.1 True 1731 mRNA 0.45 9 10716240 10720317

Neighbor

gene id symbol gene type direction distance location
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding upstream 253043 10457205 ~ 10463197 (+)
hsd11b1la hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913 coding upstream 289933 10422888 ~ 10426307 (+)
LOC122328195 LOC107726533,LOC107596895 coding upstream 298024 10413349 ~ 10418216 (+)
LOC122328194 NA coding upstream 303786 10410257 ~ 10412454 (+)
LOC122327820 LOC107675898,LOC107726531 coding upstream 307757 10407145 ~ 10408483 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding downstream 783 10721100 ~ 10759871 (+)
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding downstream 135498 10855815 ~ 10857119 (+)
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding downstream 203431 10923748 ~ 10930951 (+)
crlf1b crlf1b,LOC107729674,LOC107676985,LOC107719637 coding downstream 456191 11176508 ~ 11185087 (+)
cpamd8 LOC107593313,LOC107729694,LOC107676967,LOC107586397,LOC107699407 coding downstream 469535 11189852 ~ 11225519 (+)
G151603 NA non-coding upstream 4268 10710513 ~ 10711972 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding upstream 6485 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding upstream 7130 10709044 ~ 10709110 (+)
G151592 NA non-coding upstream 47028 10666056 ~ 10669212 (+)
G151516 NA non-coding upstream 295204 10388550 ~ 10421036 (+)
G151624 mbd3,LOC108427158 non-coding downstream 57410 10777727 ~ 10840314 (+)
G151642 NA non-coding downstream 110541 10830858 ~ 10831344 (+)
G151703 NA non-coding downstream 212346 10932663 ~ 10932995 (+)
G151738 NA non-coding downstream 355579 11075896 ~ 11077069 (+)
G151707 NA non-coding downstream 408209 11128526 ~ 11164328 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 722799 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 752606 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 805447 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 822733 9888163 ~ 9893507 (+)
G151232 NA other upstream 1136089 9577679 ~ 9580151 (+)
G151620 NA other downstream 85735 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 154111 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 197772 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 214718 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 597790 11318107 ~ 11328230 (+)

Expression


Co-expression Network