nfil3-4 (LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432)


Basic Information

Item Value
gene id nfil3-4
gene name LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10923748 ~ 10930951 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223326.1
AGACGCAGACAGGGGCTTGTGGGCTGATCTCATAAAGAGGCGAACAGGCAGCCTCTAACTTTTAATCACACTTCTCACCAAAGAGAAGCCACGAGTCAGAGAGGAGAACGTTTAATCAACTCTGCGAGGCAGGTGAGACACTCGGGTCACACGCAGACAAGACAAGTGTTTGAAGTTTGGAGAGTCTGCTGGTTCCAGTAATGAGGGGCATCCTCGGAGATGTCAACGCTGGGTGACCCGACAAGGATTCAGGAACTGTGAGAAGCTGTGAAGGTAAAGCTCCTGGTGGCAGTATGACTGAGAAGAGGCACTAACATCTGAGTAACTCCAGACggcacacacagaaagagaacaGGTGCATCTCGAGCGCAGCCATTCACAAAAGTCATACCTGGTGAAAATGGAGTCCACTTTCTCACGGGTGATGTGGGAAACTGAGGGAGAAGCCGAGGAGCTCTCTCCGAGAGGTCTGGGATTGCGTCGCAAGCGGGAATTCATACCTGAAGACAAGAAAGACGCAACCTACTGGGAGAAACGCCGAAAGAACAATGAAGCGGCGAAGCGCTCGCGAGAGAAGCGGAGGGTCAACGACTACGTGTTGGAGACTCGACTGATTTCGCTGAGTGAGGAAAATGCTCGTCTGCGAGCTGAGCTGTTGGCTCTGAAGCTTCGATATGGTTTGCTTAACCCTGGAACGCCTTATTCCACATCTCAAAGGGCTCTGTCTCAGCTTCACGCTTTGGCGCCCCAACCTTTGGTTTCTTGCCCAGACAAAGACCTCTACTGGGGTAGACTGCAAGATAGAGAGGCTTCTAATCTATCTGGAAACCAACAAGCACCCCTCTGTCTTGGCACCCACCCCGGGTCGGCGTTCCTGCCTGCGCATCCTATGGCCATACGAAGAAACCACCCATATCTCCTAGACTTCCCCAGCCTCCACTCTTCCCCAGCCGCACCATTACTCTTTCCTCCACACCTGGCCCCAGCAGCAGCACCCTGGGCAGGACGGTCCCTGCTCCAGCCCGGGCACCAGAGGATCTTGTCGGACGAGGAGGGCGAGCAGCAGGTGCCAGCCGATTCCAGCACTGCCCTGCCTCACAAACTAAGACTGAAGACGCAGAACTCTCAGCGCAAAGATAACAGGGCTAAATCTGCATCTCCAAATCCTGCATACATGTCAGATTGAAATCCAGCTCTGACTCATTAGTTGTGAGTCATACAACTCATTTTTGATAATTGAACATTGGCTGTATTCCAGGAACTTTTGTTGCACACCATTacgataaaaaaatatttctttgatCAAAAGGTCACATATTCAGATTAAGTTTCAGAGATGCATTTATAGTCAATTTTTCCATCGTTGAGGTTTGAAGCGGCTTCAAACCCAAGTTGAATTGTGCATACATCTACCAACTTTTGTTTTATAGACACGAAAGTAGGgggtgagagaaagagaacaggattttagaaatagaaaaagGAATTGACCCAAATTGGACTCGAACCGTTGATTCTGCCAAAACTTTGGCAATCACTTCTTTTGTGAATGCATTTAtgtctgcatttacatttatgtatttggcAGATGCTTCTATCCGAaagcaatttttaattaatgcattccAAAACTGTGTTGGAGTCACAATCCAGTTAAAGGAATGCTACCCCCTTGTTTAATATAACCTATGCTTGCTTTAATTTAGCTGCTGGTGTCAGACTgacatttcaatcaatcaatcatttttatttatatagcgcttttaacaacacaggttgcatcaaagcactgtacagtataatgacagggatgtatagtgacgagagtgaccaat

Function

NR:

description
nuclear factor interleukin-3-regulated protein-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223326.1 True 1835 mRNA 0.47 2 10923748 10930951

Neighbor

gene id symbol gene type direction distance location
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding upstream 66629 10855815 ~ 10857119 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding upstream 163877 10721100 ~ 10759871 (+)
hmg20b hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902 coding upstream 203431 10716240 ~ 10720317 (+)
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding upstream 460551 10457205 ~ 10463197 (+)
hsd11b1la hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913 coding upstream 497441 10422888 ~ 10426307 (+)
crlf1b crlf1b,LOC107729674,LOC107676985,LOC107719637 coding downstream 245557 11176508 ~ 11185087 (+)
cpamd8 LOC107593313,LOC107729694,LOC107676967,LOC107586397,LOC107699407 coding downstream 258901 11189852 ~ 11225519 (+)
odf3l2b odf3l2,LOC107593346,LOC107676969,LOC107729669,LOC107699397,LOC107586461 coding downstream 295209 11226160 ~ 11229779 (+)
shc2 shc2,LOC107729700,LOC107593314,LOC107586398,LOC107719564 coding downstream 301784 11232735 ~ 11249556 (+)
shdb shdb,LOC107676987,LOC107729709,LOC107719565,LOC107586400 coding downstream 337997 11268948 ~ 11295523 (+)
G151624 mbd3,LOC108427158 non-coding upstream 83434 10777727 ~ 10840314 (+)
G151642 NA non-coding upstream 92404 10830858 ~ 10831344 (+)
G151603 NA non-coding upstream 211776 10710513 ~ 10711972 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding upstream 213993 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding upstream 214638 10709044 ~ 10709110 (+)
G151703 NA non-coding downstream 1712 10932663 ~ 10932995 (+)
G151738 NA non-coding downstream 144945 11075896 ~ 11077069 (+)
G151707 NA non-coding downstream 197575 11128526 ~ 11164328 (+)
LOC122327758 NA non-coding downstream 197955 11128906 ~ 11140378 (+)
G151750 NA non-coding downstream 251890 11182841 ~ 11183080 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 1717 10918089 ~ 10922031 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other upstream 31725 10874428 ~ 10892023 (+)
G151620 NA other upstream 86383 10806052 ~ 10837365 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 930307 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 960114 9923547 ~ 9963634 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 4084 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 387156 11318107 ~ 11328230 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other downstream 891983 11822934 ~ 11825207 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other downstream 895614 11826565 ~ 11835134 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other downstream 1079518 12010469 ~ 12276608 (+)

Expression


Co-expression Network