odf3l2b (odf3l2,LOC107593346,LOC107676969,LOC107729669,LOC107699397,LOC107586461)


Basic Information

Item Value
gene id odf3l2b
gene name odf3l2,LOC107593346,LOC107676969,LOC107729669,LOC107699397,LOC107586461
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11226160 ~ 11229779 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223327.1
GTAGTGTTACATGACGGTGAATTCAAGTGATGACACTTTTGTGCTTCTCTCTCAAacgcatgtgtatatttaatggGTTTGGCGGCCCCTGATTGAGTCAACCAGGTTGAATGGAGATTACTCCAAAAAGTGTTCAGTTTGGGCGGCTTTAGTTCTGACATTATCAGATCACTGGACAGTGGAGAACTTGACTGGGCTTGTCCAGTCCAATAGGACATCTGATTTAGTGCCGCTAGgaagatgaaaatgaaaaagttctACTAACCAGCGCCTCTTGGATGTTTTGAAGATCTACACCTACTTGGGGTTTTTGCAAGCAGCTGCTTGCGTTTTTAAACTGCCTGGAAAAACTGATGCTGACGCAAATGTTAATTCCTTAATAATTGCTTGTCCTTGAGCTCTGTTTACTCAAATTCCCCGGGAAAAGTTGGCATGGAAATTTGATAGTAAGTAGGCCCATGTCCAAATCTGCCGGATTCGGATAACTTGGAATTCTAAAAGGGTTAAACCTCCGGTTCCAAATGCAATCTTGACGATGAGTGAAACCGAGAGGAAGCGTCCGGTCATTGCTGGCAGAGAAAAAGGGCCAGGACCTGGTCGATACATCCTTCCACCGGCTATAGGCTTTGTAGGCCACGATTTCACCAAATTAACAAGCCCCGCTTATTCCTTTCATGGCAGGATGAGTAACGACATGCACAGCATTGACTGTAGTCCAGGGCCTAAGTACCATATCGATGCCAAACTGACTCGCTTTGGAAGAGACGGCACCCCTGCCTATTCCATGAACGGCAGGACGGAAAGTCGAGCAGCCGTCTTCTCCACTCCCGGACCGGGAGCGTACAGTCCCGAGAAAGCCTCTCTGTGCAGCATCCATCGCAAACCTCCGTCCCACACCATGGGCTATCGAACGCCGTATCGCTCGCTGGACACCGTGCCTGCCCCGAACAAATACACCCTACCTTCTCTCATGGGCTCCGGCGTCTCCACCAAAACATCCAGTGCCAGTTACACCATCTCTGGGAGATGCAAACCTGGGGCTCCGACCGAGGACTCCTCTAAAACTCCGGGGCCTTGTAGATACAACCGCACGGATCCCAGTGTCTATCTCCCGAGGCAGCCGGCGTTCTCCATGCTGGGGAGACACGCTGCTGCAAGGGAGCCCGCCGTGGAACCAGGCCCAGGAAGTCACAACCCAGAGAAAGTGACCGTGCACAAGCCCAGACCTCCTGCTTTCTCTTTAGGGATCAGGCACTCGGAGTTTGTGACCCCTTTAATAGCAGATTAGTAGTGTTTTTGTGCATGCGGATCTTTTTCCTGCTCGTTTTGAACAGTTTCTCTGCTTGTTTAAAAAGGGTTTGGTGAACACTCTTAGTGCAATTTCTAGTCAGATAAATATTGTAGAAGTTAGCATAACTAAAACCATTAATCAGTGACtcttcaaattattaaattttaatataaaatgttaaacacaatcacacatttatataaatgctgtcatattatgattaattgcatccaa

Function

symbol description
odf3l2 Located in cytoplasmic microtubule.

NR:

description
outer dense fiber protein 3-like protein 2 isoform X2

GO:

id name namespace
GO:0007286 spermatid development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223327.1 True 1525 mRNA 0.47 4 11226160 11229779

Neighbor

gene id symbol gene type direction distance location
cpamd8 LOC107593313,LOC107729694,LOC107676967,LOC107586397,LOC107699407 coding upstream 641 11189852 ~ 11225519 (+)
crlf1b crlf1b,LOC107729674,LOC107676985,LOC107719637 coding upstream 41073 11176508 ~ 11185087 (+)
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding upstream 295209 10923748 ~ 10930951 (+)
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding upstream 369041 10855815 ~ 10857119 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding upstream 466289 10721100 ~ 10759871 (+)
shc2 shc2,LOC107729700,LOC107593314,LOC107586398,LOC107719564 coding downstream 2956 11232735 ~ 11249556 (+)
shdb shdb,LOC107676987,LOC107729709,LOC107719565,LOC107586400 coding downstream 39169 11268948 ~ 11295523 (+)
plpp2b plpp2b,LOC107676990,LOC107593320,LOC107729714,LOC107719563,LOC107586402,LOC107699401 coding downstream 100926 11330705 ~ 11345014 (+)
tle2a tle2,LOC107699413,LOC107586403,LOC107593318,LOC107729686,LOC107719561,LOC108430092 coding downstream 123498 11353277 ~ 11381737 (+)
LOC122327738 LOC107717981,LOC107676948,LOC107593360,LOC107699418,LOC107586443,LOC107719634 coding downstream 277682 11507461 ~ 11512935 (+)
G151750 NA non-coding upstream 43080 11182841 ~ 11183080 (+)
G151707 NA non-coding upstream 61832 11128526 ~ 11164328 (+)
LOC122327758 NA non-coding upstream 85782 11128906 ~ 11140378 (+)
G151738 NA non-coding upstream 149091 11075896 ~ 11077069 (+)
G151703 NA non-coding upstream 293165 10932663 ~ 10932995 (+)
G151815 NA non-coding downstream 67129 11296908 ~ 11297153 (+)
G151813 NA non-coding downstream 104390 11334169 ~ 11384582 (+)
G151820 LOC102206479,LOC100709852,LOC101484522,LOC107676966,LOC107729686 non-coding downstream 157853 11387632 ~ 11388850 (+)
G151832 NA non-coding downstream 197181 11426960 ~ 11427334 (+)
G151841 NA non-coding downstream 236084 11465863 ~ 11468274 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 231216 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 304129 10918089 ~ 10922031 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other upstream 334137 10874428 ~ 10892023 (+)
G151620 NA other upstream 388795 10806052 ~ 10837365 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 1232719 9970622 ~ 9993441 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 88328 11318107 ~ 11328230 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other downstream 593155 11822934 ~ 11825207 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other downstream 596786 11826565 ~ 11835134 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other downstream 780690 12010469 ~ 12276608 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 945908 12175687 ~ 12189006 (+)

Expression


Co-expression Network