foxq2 (foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973)


Basic Information

Item Value
gene id foxq2
gene name foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10855815 ~ 10857119 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223328.1
ATGGAGGACAATGCGTGCTGCAGCAATCGAGAACAACTGGGACTTCAGTTCACTATTGACTATCTTTTGTACAACAAAGGACGCAACGATGAGAGGGCAGAACCTGAGGACAATGGCCCTACATCTGAAGGTCTTCAAAGCACCGTCAAAGAAAGTCTCTCAGAACAGAACAGCGAAAAATCAGAAGACCaggaaaatgaagaaaacgGCTGTGAAGGGGAACACGAGAAGACAAGTCTGAAGGGTGAAGGAACGGACGAGAAGCCAGCGCAGTCCTACATTGCCCTCATTTCCATGGCCATCTTGGATTCAGATGACAAGAAGCTCCTACTATGTGATATTTACCAATGGATCATGGAGCACTATCCTTACTTCAAGAGCAAGGACAAGAACTGGAGAAACAGCGTCAGGCACAATCTCTCTTTGAACGAGTGCTTCATCAAAGCCGGTCGCAGCGACAATGGCAAGGGCCATTTCTGGGCTATTCATCCGGCCAACTTTCAAGACTTCTCTAACGGAGACTACCACCGGCGGCGCGCCCGGAGAAGGATTCGCAGAGTAACAGGGCAGCTGCCCTTCGCGTTACCCGCGCATTACCAAAACCTCGGCCCCCTGAAACGGACACCATGTTGGTGTTGTCCACCAACGCATCCATTGATTTGCTTCTCGCCCAGAGTGTACTGGAACTGGGCTGCACTTCAGACACATCGCAGGCCATCTCTTCATGGACTGATATAA

Function

symbol description
foxq2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus.

NR:

description
forkhead box protein D4-like

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223328.1 True 738 mRNA 0.50 2 10855815 10857119

Neighbor

gene id symbol gene type direction distance location
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding upstream 95944 10721100 ~ 10759871 (+)
hmg20b hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902 coding upstream 135498 10716240 ~ 10720317 (+)
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding upstream 392618 10457205 ~ 10463197 (+)
hsd11b1la hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913 coding upstream 429508 10422888 ~ 10426307 (+)
LOC122328195 LOC107726533,LOC107596895 coding upstream 437599 10413349 ~ 10418216 (+)
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding downstream 66629 10923748 ~ 10930951 (+)
crlf1b crlf1b,LOC107729674,LOC107676985,LOC107719637 coding downstream 319389 11176508 ~ 11185087 (+)
cpamd8 LOC107593313,LOC107729694,LOC107676967,LOC107586397,LOC107699407 coding downstream 332733 11189852 ~ 11225519 (+)
odf3l2b odf3l2,LOC107593346,LOC107676969,LOC107729669,LOC107699397,LOC107586461 coding downstream 369041 11226160 ~ 11229779 (+)
shc2 shc2,LOC107729700,LOC107593314,LOC107586398,LOC107719564 coding downstream 375616 11232735 ~ 11249556 (+)
G151624 mbd3,LOC108427158 non-coding upstream 15501 10777727 ~ 10840314 (+)
G151642 NA non-coding upstream 24471 10830858 ~ 10831344 (+)
G151603 NA non-coding upstream 143843 10710513 ~ 10711972 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding upstream 146060 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding upstream 146705 10709044 ~ 10709110 (+)
G151703 NA non-coding downstream 75544 10932663 ~ 10932995 (+)
G151738 NA non-coding downstream 218777 11075896 ~ 11077069 (+)
G151707 NA non-coding downstream 271407 11128526 ~ 11164328 (+)
LOC122327758 NA non-coding downstream 271787 11128906 ~ 11140378 (+)
G151750 NA non-coding downstream 325722 11182841 ~ 11183080 (+)
G151620 NA other upstream 18450 10806052 ~ 10837365 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 862374 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 892181 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 945022 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 962308 9888163 ~ 9893507 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 17309 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 60970 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 77916 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 460988 11318107 ~ 11328230 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other downstream 965815 11822934 ~ 11825207 (+)

Expression


Co-expression Network