rex1bd (si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814)


Basic Information

Item Value
gene id rex1bd
gene name si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11174143 ~ 11188692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223340.1
gaagtgagtcCGACGGCGTGACTAAACGAAACGGACACATGTCGCAGGAAAGAGCTACGAAAACACAGgcaCCTACAGATTTCAAAAATTTGGTCAGAAGATTTTATGTACTTCAAGCTGAGCGTGTGGAGGCATACAAACTATTTGAGGAGGGTCATGAGGCGTACTTAAGGACGGGGCCCCACTATGACTTCGATCGCTACAAACAGCTGGTACATGAGATAACGAAAGCATTCTGCGGCATTTCCAAAGAGGTTCTGCAGATTAAAGAGCAGCTGCACCAAGACTTCGACCGGCCCGACCTCTCCGAACACATTGACAAACTGCAGATTAAAGAGAAGGAGAAATTAGAGCTGACAGCTAAGTTACAGCTGGCCAAGCAGAACGCCCAGGATCACCCAGAAGATGAGGATTTCCAAGAGAAAGTCCGTGAGGTCAAACAGGAGATTATAAAGAACACGGCTGCTTTGAGTGAGATTCTGCAAGACTTCAAGTATGACTCGGAGGAGCCGGAGTGAGATTCGGTCAATCCCGGGGAGACAGAGATGGAGTCGGATGCTCTATGAACTTTCCTTTCTGATGAAGAGCGATCTAAGGTATCGATCGCTGTCTCAGGAGTCGGAGTGCATTGCTGCTGCAGGCTCTGcagtgcatatttttattaaagagagTTTGGcatcttttatttcataattttttttatacatttagtaCAGCTTATGACGTTTTGTTTGCTAAACCAACCACCAACAGTGTTCACTGAAAGcatacatttgttcattttgaatgtaaatggCGTTCATTATTCTGTGCAGCATAATATTCAGCAAAGGCTACTgtgttacaatatatatatgaacattccttaaatattttgaagacatttatacagacaaaactatttatacataatgatacagtatttacataatgtttttgaacacaGAGGACAAACCAATTGCAAACTGCATTTCAAACACCAATTTAGACATGTACgtttaacaattaaaagaacagtACACTAAAA
>XM_043223341.1
GCGCacccaaacaggaagtgagtcCGACGGCGTGACTAAACGAAACGGACACATGTCGCAGGAAAGAGCTACGAAAACACAGGTACAGCAGCATGgcaCCTACAGATTTCAAAAATTTGGTCAGAAGATTTTATGTACTTCAAGCTGAGCGTGTGGAGGCATACAAACTATTTGAGGAGGGTCATGAGGCGTACTTAAGGACGGGGCCCCACTATGACTTCGATCGCTACAAACAGCTGGTACATGAGATAACGAAAGCATTCTGCGGCATTTCCAAAGAGGTTCTGCAGATTAAAGAGCAGCTGCACCAAGACTTCGACCGGCCCGACCTCTCCGAACACATTGACAAACTGCAGATTAAAGAGAAGGAGAAATTAGAGCTGACAGCTAAGTTACAGCTGGCCAAGCAGAACGCCCAGGATCACCCAGAAGATGAGGATTTCCAAGAGAAAGTCCGTGAGGTCAAACAGGAGATTATAAAGAACACGGCTGCTTTGAGTGAGATTCTGCAAGACTTCAAGTATGACTCGGAGGAGCCGGAGTGAGATTCGGTCAATCCCGGGGAGACAGAGATGGAGTCGGATGCTCTATGAACTTTCCTTTCTGATGAAGAGCGATCTAAGGTATCGATCGCTGTCTCAGGAGTCGGAGTGCATTGCTGCTGCAGGCTCTGcagtgcatatttttattaaagagagTTTGGcatcttttatttcataattttttttatacatttagtaCAGCTTATGACGTTTTGTTTGCTAAACCAACCACCAACAGTGTTCACTGAAAGcatacatttgttcattttgaatgtaaatggCGTTCATTATTCTGTGCAGCATAATATTCAGCAAAGGCTACTgtgttacaatatatatatgaacattccttaaatattttgaagacatttatacagacaaaactatttatacataatgatacagtatttacataatgtttttgaacacaGAGGACAAACCAATTGCAAACTGCATTTCAAACACCAATTTAGACATGTACgtttaacaattaaaagaacagtACACTAAAA
>XR_006247708.1
gaagtgagtcCGACGGCGTGACTAAACGAAACGGACACATGTCGCAGGAAAGAGCTACGAAAACACAGgcaCCTACAGATTTCAAAAATTTGGTCAGAAGATTTTATGTACTTCAAGCTGAGCGTGTGGAGGCATACAAACTATTTGAGGAGGGTCATGAGGCGTACTTAAGGACGGGGCCCCACTATGACTTCGATCGCTACAAACAGCTGGTACATGAGATAACGAAAGCATTCTGCGGCATTTCCAAAGAGGTTCTGCAGATTAAAGAGCAGCTGCACCAAGACTTCGACCGGCCCGACCTCTCCGAACACATTGACAAACTGCAGATTAAAGAGAAGGAGAAATTAGAGCTGACAGCTAAGTTACAGCTGGCCAAGCAGAACGCCCAGGATCACCCAGAAGATGAGGATTTCCAAGAGAAAGTCCGTGAGGTCAAACAGGAGATTATAAAGAACACGGCTGCTTTGAGTGAGATTCTGCAAGACTTCAAGTATGACTCGGAGGAGCCGGAGTGAGATTCGGTCAATCCCGGGGAGACAGAGATGGAGTCGGATGCTCTATGAACTTTCCTTTCTGATGAAGAGCGATCTAAGATGGGACCCGAACTCTACAGGACATTGACCCTCAAGGAGGAGGATGGACTAAACCATTCCAGCCATACCTTCCATTCGTCACTCTCCTCCACACGGTATCGTATCTGATACTTCGCCTGAAACAGGTAGTCTTTCAG
>XR_006247709.1
gaagtgagtcCGACGGCGTGACTAAACGAAACGGACACATGTCGCAGGAAAGAGCTACGAAAACACAGgcaCCTACAGATTTCAAAAATTTGGTCAGAAGATTTTATGTACTTCAAGCTGAGCGTGTGGAGGCATACAAACTATTTGAGGAGGGTCATGAGGCGTACTTAAGGACGGGGCCCCACTATGACTTCGATCGCTACAAACAGCTGGTACATGAGATAACGAAAGCATTCTGCGGCATTTCCAAAGAGGTTCTGCAGATTAAAGAGCAGCTGCACCAAGACTTCGACCGGCCCGACCTCTCCGAACACATTGACAAACTGCAGATTAAAGAGAAGGAGAAATTAGAGCTGACAGCTAAGTTACAGCTGGCCAAGCAGAACGCCCAGGATCACCCAGAAGATGAGGATTTCCAAGAGAAAGTCCGTGAGGTCAAACAGGAGATTATAAAGAACACGGCTGCTTTGAGTGAGATTCTGCAAGACTTCAAGTATGACTCGGAGGAGCCGGAGTGAGATTCGGTCAATCCCGGGGAGACAGAGATGGAGTCGGATGCTCTATGAACTTTCCTTTCTGATGAAGAGCGATCTAAGGACTCCATCATGAATGCCTGTCACCGCGGCTGCAGGCTCTACTCCATCTGCCAGTTTGTGAATGGAAATACAGGCATCAACACCAGCAAGGAAGAGTGCCAGGGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223340.1 False 1027 mRNA 0.41 5 11186291 11188678
XM_043223341.1 True 1054 mRNA 0.42 5 11186291 11188692
XR_006247708.1 False 733 transcript 0.48 6 11179704 11188678
XR_006247709.1 False 702 transcript 0.49 6 11174143 11188678

Neighbor

gene id symbol gene type direction distance location
ssbp4 ssbp4,LOC107719571,LOC107676978,LOC107729707 coding downstream 45473 11077596 ~ 11128670 (-)
fkbp8 fkbp8,LOC107676977,LOC107719572,LOC107699404,LOC107729668,LOC107586436 coding downstream 98490 11062765 ~ 11075653 (-)
ell ell,LOC107729685,LOC107719573,LOC107655162,LOC107586435 coding downstream 113072 11031722 ~ 11061071 (-)
dot1l dot1l,LOC107719574,LOC107655195,LOC107586394,LOC107729667 coding downstream 146030 11003059 ~ 11028113 (-)
amh LOC107729672,LOC107676960,LOC107593309 coding downstream 173157 10997306 ~ 11000986 (-)
ankrd24 ankrd24,LOC107729675,LOC107719567 coding upstream 61296 11249988 ~ 11266155 (-)
s1pr3a s1pr3a,LOC107676952,LOC107719654,LOC107729679,LOC107593356,LOC107699398,LOC107586462 coding upstream 112873 11301565 ~ 11305187 (-)
trnaq-uug_21 NA coding upstream 159688 11348380 ~ 11348451 (-)
tle2b si:dkey-42p8.3,LOC107719559,LOC107676970,LOC107699414,LOC108271164,LOC108430094 coding upstream 193501 11382193 ~ 11426081 (-)
tle5 aes,LOC107586404,LOC107593322,LOC107699415,LOC108430095,LOC108271216 coding upstream 251524 11440216 ~ 11465075 (-)
LOC122327759 NA non-coding downstream 14414 11155787 ~ 11159729 (-)
G151762 NA non-coding downstream 127916 11043997 ~ 11046227 (-)
G151704 NA non-coding downstream 240722 10932994 ~ 10933421 (-)
G151702 NA non-coding downstream 241634 10930882 ~ 10932509 (-)
G151668 NA non-coding downstream 389901 10783638 ~ 10784242 (-)
G151858 NA non-coding upstream 108533 11297225 ~ 11297463 (-)
G151870 NA non-coding upstream 183437 11372129 ~ 11378059 (-)
LOC122327760 NA non-coding upstream 301981 11490673 ~ 11492960 (-)
G151889 NA non-coding upstream 320708 11509400 ~ 11518141 (-)
G151893 NA non-coding upstream 333338 11522030 ~ 11523422 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other downstream 179191 10935052 ~ 10994952 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other downstream 751789 10419127 ~ 10422354 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other downstream 852480 10282022 ~ 10321663 (-)
G151425 NA other downstream 1190996 9957811 ~ 9983147 (-)
gpx4a gpx4a,LOC108429535 other downstream 1671137 9498669 ~ 9503006 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other upstream 41282 11229974 ~ 11231249 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other upstream 277160 11465852 ~ 11490654 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other upstream 604881 11793573 ~ 11804698 (-)
LOC122327182 NA other upstream 652896 11841588 ~ 11845142 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other upstream 856777 12045469 ~ 12049538 (-)

Expression


Co-expression Network