lmnb2 (lmnb2,LOC107679080,LOC107678108,LOC107744643,LOC107741802)


Basic Information

Item Value
gene id lmnb2
gene name lmnb2,LOC107679080,LOC107678108,LOC107744643,LOC107741802
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2206483 ~ 2217633 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223356.1
CGGCGGCCATTTTCTTTTCACACCTCCGTTTCAAAGGCAGCCAACCAGCTCCCGGACTACAAAACACGGTTTCATTCAAAAAACTCCGCAAACAAAAACTTCCGAACGCCACCGGAGAGCCGTCCCAAGCGCGACTCGGAGGCCGCTGCGTACACCGGGCCGAAGTGGACTGTGGACTCGGAGGACTGTTTTATTTGAGCCGAAGTGGGTGTCTGGAGCGCGAAGCGATATGGCGACCGCAACCCCGAGCCGCGAGTCGAGCCGCGCGTCGGCCGCGAAGACGCCGCTGAGCCCCGCGCGCATCTCGCGCCTGCAGGAGAAAGAGGAGCTGCGCGCGCTCAACGACCGCCTGGCCGTGTACATCGACCGCGTGCGCTCCCTCGAGCTCGAGAACGACCGGCTGCTCGTCAAAGTGTCCGAGAAGGAGGAAGTCACGACCAGAGAGGTGTCTGGGATCAAGTCTCTGTATGAGGCCGAGCTCGCCGACGCCAGGCGGGTCCTCGACGAGACGGCTCGAGAGCGAGCGAGGCTTCAGATCGACCTGGGGAAAGCCACCTCGGAGCTCGAGGAGGTCACCCGCAACTATAAGAAGAAGGATGGAGACCTGTCTGTGGCTCAGGCCCGGATCAAGGAGCTGGAGGCGCAGTACAACAAGAACGAGGCGGCTCTCAACACGGCGCTCAGCGAGAACAAGGCTCTATCCGCAGACCTCGCCGACCTCAAGGCCCAGCTGGCCAAAGCCGAAGACGCTCACGGCGTGGCCAAGAAGCAGCTGGAGGCCGAGACGCTGATGAGGGTGGACCTGGAGAACCGCTGCCAGAGCCTGTCCGAGGAGCTGGAGTTCAGGAAGAGCATGTTCGAGGAGGAGGTGCGCGAGACGCGCCGGCGTCAGGAGAAGCGCATGGTGGAGGTGGACTCGGGCATGCAGCAGGACTACGAGTTCAAGCTGGCGCAGGCGCTGCAGGACCTGCGCAGGCAGCACGAGGAGCAGGTGCAGATCTACAAGGACGAGCTGCAGCAGACCTTCAAGGCCAAGCTGGATAACGCCAAGGTGTCGTCTGACCTGAACGACAAGGCGGTGCTCACGGCCCGCGAGGAGCTGCAGGAAGCTCACCTGAGGATCGAGGGCCTGAGCTATCAGCTGAGCGCTCTGCAGAAACAGGCGTCTGCCGCCGAGGAGCGCGTCCGCGAGCTGGAGGACATGCTGTCCAGCGACCGGGACAAGTACCGCCGGCAGCTGGACGCCAAGGAGCGCGAGATGGCCGAGCTCAGGGAGTGCATGCAGCAGCAGCTCAACGAGTACCAGGAGCTGCTGGACGTCAAGCTGGCCCTGGACATGGAGATCAACGCCTACAGGAAGCTGCTGGAGGGCGAGGAGGACAGGCTGAAGTTGTCTCCCAGCCCGTCCTCTCGGGTGACGGTGTCCCGCAGCTCGGCGAGCAGCACCTCCACGTCTTCTCGTAGCACCCGCGCCAAGAGAAAGCGCGTGGAGCTGGAGGAGGCGTCCGCCGCCGCACCCAAAGTGCAGATCAGTCAGGAGGCCGAGGCCACGGGCAGCGTCAGCATCGAGGAGATCGACCTGGAGGGCAAGTCTGTGACCCTCAGGAACAACTCGGACAAGGATCAATCTCTGGGCAGCTGGCGACTAAAGAGACAAATCGCTGATGGCGAAGAAATCGCTTATAAATTCAGTCCCAAGTTTGTCCTGAAGGCCGGCCAGATTGTGACGGTGTGGAGCGCCGACGCCGGTGTGTCCCACAGTCCTCCTTCAGACCTGCTGTGGAAGAGCCAGAGCTCCTGGGGCACCGGAGAGAAGATCCTCACCTTACTGGTCAATTCCAGCGGAGAGGAAGTGGCGAAGCGAACCGTCGCCCAAACCGTGATCGAGCTGGAGAACGGCGACGATGAGGAGGGAGACTTTGGAGATGAAGATCTGTTCCATCAGCAGGGCGATCCAAAGACCCGATCCAGAGAATGTGCCGTCATGTGATGGAGGCGGCGTACCTTTTAGTATTTTCCTTCCCACGATTCAGTCTTTTTTGTAGAGCCACTACTTTTGTATTCTTCGAATCATGAGTTCATAACACCCCCTCCCTCGATCCTTTTTATTTGTACGGACCTCATTTGTAAAGCCAGTTAATCTTGAGCTGCgacgcaatttttttttcagacgcCGCTCACCGATGAGTAGTCTTTCCAGACGGCCACGTCCCATTACGCACGGTTGGCGAATGCCACCCGAGAACGAGTCAAACCACGTGAAATTAGAGTATTTGTGTGAGCCGGTGACTAACGAATCTGCGTTTTCATGCGAATGAATCCTGCACGTTCTCGTCACGGCGGGGTTACGAATggggaattattattattattattattattgttctgtAGTGCACTATAGCCCGTAACTGACAGCTGTCGCTTAGCGTACCTTATGTTGTGCTTCGCCAACCAGACGAACAGGGTGGAAAACGAGACTAGATTATTCTAAGCGTCATGCGTTTTGATTCATGCCTTACATAGTTGTTGTATGTACGATGAATCGGTGAGCGAGACGCAGCTAAACGCTAACCAGAACGGTACTTTCTTAAGAGTACAGCGTAGAAAGACTTCAAGTTCATTGAAATATTCAGAATGTTTTGCGTTTATTCAAATGTTGAGTTTGAACGAGTTTAGCACGTGAAAAGTGCTCGTCGAAATTGGCCCACATTCACAAAAGAGCAGATGCTTGTGCAGATTAACCAAAGAAACACGACGAATGAAACGTATGTGACCTGTTCACGCGGTTCGCTAACTGACTCCCGATGaattaaaacctttatttcagTCGTCGAATCCGGCGAGTAATCTGCGTCCTTCCACCCTGTCGACTCTGTagcattttaagttttaaaactttttttttttttttttttttttgtgtttcgttttaaatgtttctcaGACAATTATGCATGCGGCAGATATTTTTATAAGAAGTGTTTCTGCGAGGGTCAACGCTTCCAGTTTTTCAGACGAGCTGCGCCATACTGCAGTTTGATTTTAGCTACAATCGTATATTTTTGATAGGGTTTAGTTTTTCCCCCCACCTCGGGATTTTTAAAACCCTAGTTCACGAGAATCTTTaaatgcgtttaaaattgaCATATTCAAATTTGTGAATATATTCGGTGCAGTGTGTACAAAACAAATTGACCTGGGAAACATCtgtataatttctttctttcataagGTAATGCCGTGCGGAACTATTACGTTATTTTAATGGGGTTATCATTTATCTACGTTTACTTCTTAGGGTTCTTTTTGAAGGTTCTGAGGAAACGAATCGTTTGATAGTGTACCAATTGGGGTGTAACACACAAGTGTTGTGTGAGATTTAAGTGAAATTAAGCTCAAGTAAGTTGTATGTGTGTACATTCGTTGCTTGGCCTCTGAGCTAATAAAATctaccttttttatttagtttaacgTCACGTGACGTGAATGGAAACCGTTTTCTTTTGCCAAACACTCCACATCTGTGAATTTAAAATTTAGCTTCTTTTAGTTACGTACACTGTTTTCGAGAGGAAAGTCATTTCCTTGTTCTTTCAGGTTTTATTAGACGGGGCTGTGACTTATGTAACGGATACAATGTTCTTCGGTGTATTTTAATAGGCTACGAAATTGTCAATCTGTCATAATAATCTACTGTTAAGTGAAAATTGCTATTGCCATCAAAGGCATTCGAATGTGAGATTTAAGGCTGTAAAATTGAGCCGTAAATAGTGAACTATGAATCCAATTTGTTAGGGGGGTAAATTGTACGAAGACTTTTGAAGGCCTACAAGAGGAGGGCGCATGCCAAAAGTGTCTCATTAATTGTGATCTATtttactttgtcatttttttttgtatgcaatatccaataaatgttttacatattaa

Function

symbol description
lmnb2 Located in nuclear envelope. Human ortholog(s) of this gene implicated in partial lipodystrophy; primary autosomal recessive microcephaly; and progressive myoclonus epilepsy 9. Orthologous to human LMNB2 (lamin B2).

NR:

description
lamin-B2

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07611 LMNB; lamin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223356.1 True 3930 mRNA 0.51 12 2206483 2217633

Neighbor

gene id symbol gene type direction distance location
ing5a ing5,ing5a,LOC107574595,LOC107678097,LOC107548837,LOC107679074,LOC108424972 coding downstream 51102 2148678 ~ 2155381 (-)
pigx NA coding downstream 59983 2143038 ~ 2146500 (-)
pak2b pak2b,pak2,LOC107741800,LOC107678112,LOC107679089 coding downstream 64120 2132741 ~ 2142363 (-)
aqp12 NA coding downstream 77518 2124590 ~ 2128965 (-)
trnai-aau_113 NA coding downstream 78548 2127862 ~ 2127935 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847,LOC107678106 coding upstream 4206 2221839 ~ 2231871 (-)
gpr35.1 LOC107717171,LOC107678099,LOC107580869,LOC107678091 coding upstream 33578 2251211 ~ 2255460 (-)
si:zfos-943e10.1 LOC107678111,LOC107717170,LOC107559831,LOC107562095,LOC107679086 coding upstream 38503 2256136 ~ 2269855 (-)
tbxa2r tbxa2r,LOC107744660,LOC107678103,LOC107559829,LOC107562097,LOC107679093,LOC107717168 coding upstream 64591 2282224 ~ 2289327 (-)
ptprsa ptprd,LOC107559826,LOC107679075 coding upstream 79600 2297233 ~ 2469561 (-)
G148707 NA non-coding downstream 49666 2156256 ~ 2156817 (-)
LOC122327838 NA non-coding downstream 73800 2129531 ~ 2132683 (-)
G148679 NA non-coding downstream 74303 2129842 ~ 2132180 (-)
trnag-gcc_103 NA non-coding downstream 75200 2131213 ~ 2131283 (-)
trnad-guc_17 NA non-coding downstream 75525 2130887 ~ 2130958 (-)
LOC122328197 NA non-coding upstream 300804 2518437 ~ 2524302 (-)
LOC122327855 NA non-coding upstream 309461 2527094 ~ 2563223 (-)
G148749 NA non-coding upstream 373939 2591572 ~ 2592729 (-)
G148860 NA non-coding upstream 480480 2698113 ~ 2759687 (-)
G148889 NA non-coding upstream 656778 2874411 ~ 2983937 (-)
LOC122328032 NA other downstream 90300 2114320 ~ 2116183 (-)
G148613 NA other downstream 541856 1661185 ~ 1664627 (-)
G148574 NA other downstream 552143 1643710 ~ 1654340 (-)
LOC122327995 NA other downstream 580576 1580290 ~ 1625907 (-)
gpr35.2 NA other upstream 26998 2244631 ~ 2250561 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 833767 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 1006515 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 1037763 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 1107942 3325575 ~ 3366122 (-)

Expression


Co-expression Network