si:ch211-246m6.4 (si:ch211-246m6.4,LOC107656681,LOC107751464,LOC107565497,LOC107739350,LOC107600989,LOC107653571,LOC107600970)


Basic Information

Item Value
gene id si:ch211-246m6.4
gene name si:ch211-246m6.4,LOC107656681,LOC107751464,LOC107565497,LOC107739350,LOC107600989,LOC107653571,LOC107600970
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7537637 ~ 7542060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223398.1
AACTAAAGCGTCTGGAGAAAAGAATTGAACCGATTTAAATACGGCTTACATGCTTCTTGTGGTGGTGTCGATGTTAAAACTAgaaacagattttcttttagAAGACTTCAGAATACAAATGTTACACCTTGAGGATTCATCAATTTTAACAAAAGGCTGGTATCTTGAAACAATTGCAGCGATTTCTGATTGGCCACAGTTGTTTCACTATGCCAATCTTTCATTTGGAACAGGCAAAAATTGTGCAGTTTATGTCAGGCTTAAAGTCTTTTCCAAGAACTTTCTTCACAGTTATTTTCATGTCAAACAGGTGTTCTGAATTACATATTAGAAACACTGCCCCCTATATGCAGCTGTGTCTCTCTCCTTTTGGACCTGGAGCCCATGTGATACGAATTTTACAGGCAACGACAACAGTATCTGTCTGTAAACTTTTCAGAGCTAAATTTAGCGCCGGGTCAAACAGAACAAGGTTGTTTAGCTGCTGTATACAAAGTATATAACATACAAAGACTTCATAAGTCATAGAGACGATGAAATGTTGAGCAAACAATAACAGGAGCAAGGGATGAATGGACCAGAACGaagatacaaaaacaaaagtcgTCTTAGGGAAGGTAGGAAAGATCACCGTCCTGGCTTCCTGTTGACCTGCACAAGGTCAGCCAGCAGACCTGGTACTCGAATGTTATAGGCCAAAGGTATAAAAAACACCAAAATCCCTGAACTTGTATTAGTGCGTgcacttatttatatatcttcAAACGTCCTCCTTCTTTGGGGCATGACAGGTGGCCCCCCAACTCCACCTGTCCATCCTTTTCCACAGCCACATGGTGGCGGACAAATCCAGAAAGGGATCAGTCATTCAAGAAATGGCATGCTGAAGTGCCACGGGGCCACGGAAGATCTCTGGATACCGGATCAGACGCAGCTGCCCCCCGGCTGCTATTTTCACTCAGCTTAAAGTACCATGGGCAGCCAGCATCTACGCCATGGACTACCCACAACTACCAGTCTGTCTCTGCACGCCATGAAGTCCACCGCAGGGGAGCACGAGCATCTTCCACACGATACCCAGAGCTTGCCCTCCGACCCTGATGAGCTCGACAGTGGCAGCGAAAGCTCTGAGAAATCCACCGGAGCAGGGAGCCCCACGCGGGGCCACAGGGAGGCGGGGAGACGCAGAGGGGGTCGTAGACTCGCAGGGGTGAGCAAACAACGCCAGGCAGCTAATGCTCGGGAGCGAGACCGCACACATAGTGTCAACACTGCCTTCACGGCTCTGCGTACCCTCATCCCTACGGAGCCGGCCGACAGGAAGTTGTCAAAAATCGAGACCCTGCGATTGGCATCAAGCTACATTTCACACTTGGCCAACGTGCTTCTGCTAGGGGAGGACTGCATGGACGGGCAACCGTGTCTGAAATATCACAACATCTTACAAGGCAACACCAACCTCAAAACTCCACCGGTTCGACCCATATGCACCTTCTGCTTGAGTAACCAGAGGAAATTGCTTAGAGATGGGGAAAAGCACACAACTGCGTGACGGCAGAAGTTCTCCCGAATGACCACTGCTACGTAGGGGCTCTCAACTTCTGAATGTTTACATGTAAAGAGACTTCGCCTTGCACagagacaaaacattttatctaacttttttttgtttttgttttaatctcttGAGGACAGACAAAACGAGCAACAAGAAGAGAAACAAATCTGCACTTTTTCTGCATGCGTGTTCACTTTATCACTGTTTTGGTTAATGTAACCGGATAATATGTGTAAAGTTGCACCTGGTGGGAGGCTATTTCAGTATCAGATATAGTAAGCTACACCATCCCTCGCCTTAAAAAACAGTCTTGTGTCTGCCTCTTGCACGTCACATGATGGTAATTGAAACCTTGCGGTTTGCAGTGGTCGCTGTCAGTACTACGGTGGGTAAAAATCTCATCCCCTCCCTCTTGTCTCCACATCTACGACGGGACCACGATCCCAACATGGCTCTCGGGAGACTGTAAACAAGATTCTAACCTCAGCATGATAATTTGGGTTAGGCAAAgcatgcttaatatttattagaaaGTTCAAGTAGCACATGACTGAATTTTATAGGTGGAAATATTTTGTAGTGAGAACATCTTATGTCTTGGGAACTGTTGTTGGTCAAGGTACATGATCCTTAACACGAGCCATGGGTTATGACCCTGACCCCAAAAGTTTTATAGCGTTGCGGTCACATTCAGAGAACACACAGAGGTAACAATGTTGCATAGAATGTAGATTAGTAGTGCAGACCCTTGCAGAGGGTACGTTCTGAAAAGGGTACGTTGGGGTCACCCTGTAACAACAAACGGCATGCTTGCGCTTCTGAATCATGAAACACCAGATTCTTGTGTGAAAGAAGGCCATTTAAACAAGTTCAGCTCACGCTCACCAACATCAAAATAGAAGCTTGTtgcattgcatgcattttaagaCGTTACTGTTGTTAATGTTAGAGTGCGATTATGCAATCAATAACTCTACTATACATGATTGcacaaagctgtatttattcatatgtcAACATGGCTTTTTGTCCACTGATATGCACCAAATGAAACCAAGAACATGagacatttgtgttttaaaggagTAGATGGAAGTTTCACTAGCTGTTGCTAATTGCTCGATTTAAACATGTCAGTTCGATTTCAGAAAGTTTGACAGGTCTTGCTCAGATTGGTGCATTTCATGTTGACTAAGGTCTAGGGTAAAGGTTATAGAGCATGTGCTAATCTCAAGCGCACCACTAAAACAGCATCTGCTGAaccttgttttattgtttacattaaCGTAGCAAGTAGGAATAACAAATTTGAGCCTAACATGTACCGTGATTACAATTTTCAGATACTACACCTGCAGGGTGAATGTTTAAAAGGTAgaactatttttgtatttaacatcaagatgtaccatttttttttgtatccaaAATGTTTACCTGCATCTCTTGCACAAATAACTTCAGCTTACAGGTTTGTCTGAATCTGCAGATGGTGTAGAATgactcttcctttttttttttttcttcaatacaGATGTAAAAAAAGGTGCAATGGAAGTACCACAATGTACTGGAAATACTGTAATATGGCAAGGCTTTtgtaaatcttttgtaaatatttgcactttaacattaaaatttaagGTCAAAACACATAGTAACATGGCCTACCTTTAAAACAAGCCTGTCGTTTTCTAATACTTGAATTATCCGCTCTTTCGAAAAGTGGTCTTTTGCACAATGCCAAACAACAAGCTGCTATGTAAGCAAGTATTTttgtacaagaaaaaaaatgtctgcacTCATGACTTTCAaaccattaaattatttttgaaaaatgttctgAAAGTATTTAATCTCTGGTTTTGAGGTGCCCCCTAGTGGAAGTCACATTCCATGCGATTTTAAAATGGTGGACAAGTCTGAATTTGCAATAATCAGAAAAATAGCACGTCTGAgaaaataaagcacacaaaGCATATACTTCTAGgtctttatttcttaaaaaaagtcaattagTTATTCAGATTAAAGAAATCTGTGACAAATAAGATGGGAGATACATCATAGAAGAGGTTGGGAGTCATTTAAGGGTCTTTACAGGGTGATCAGCAATTTGTTTTCAGCGCTGTACAGTTTCATAGGCAGGGAACAGAACGCTGATGATGTCATGGGAGAAGGACTTAACCCTTTGGCAATAACATCACGATGAGACATGGTGACCGTTTCCCCCCCTTTGTGGACACTGATCATGACAGGGCATGAAGGCATCAATACCATAGAAAAGGGCGtcttaaaagcaaaaaaggcaGCCTGATCTAAATCAATGGAATGTCAATTCATAAAGGAATcattataacaataatttaagATGTCCAAACTGTGTCAACACTTAAAAGTTCCTTGAGTGAGTAAATCATTACAAAGGTTGACCACAACTTTTGtgctattttaaagtgtaaaccttaatattagaaaaatctgttaaaattaaCCATTTGTTATAAAGCCCTTAAATGACATCTAAATGTTAtggttttgagaaaaaaaaaaaagaggtagaatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaccc
>XM_043223399.1
CATTAACTAAAGCGTCTGGAGAAAAGAATTGAACCGATTTAAATACGGCTTACATGCTTCTTGTGGTGGTGTCGATGTTAAAACTAgaaacagattttcttttagAAGACTTCAGAATACAAATGTTACACCTTGAGGATTCATCAATTTTAACAAAAGGCTGGTATCTTGAAACAATTGCAGCGATTTCTGATTGGCCACAGTTGTTTCACTATGCCAATCTTTCATTTGGAACAGGCAAAAATTGTGCAGTTTATGTCAGGCTTAAAGTCTTTTCCAAGAACTTTCTTCACAGTTATTTTCATGTCAAACAGGTGTTCTGAATTACATATTAGAAACACTGCCCCCTATATGCAGCTGTGTCTCTCTCCTTTTGGACCTGGAGCCCATGTGATACGAATTTTACAGGCAACGACAACAGTATCTGTCTGTAAACTTTTCAGAGCTAAATTTAGCGCCGGGTCAAACAGAACAAGGTTGTTTAGCTGCTGTATACAAAGTATATAACATACAAAGACTTCATAAGTCATAGAGACGATGAAATGTTGAGCAAACAATAACAGGAGCAAGGGATGAATGGACCAGAACGaagatacaaaaacaaaagtcgTCTTAGGGAAGGTAGGAAAGATCACCGTCCTGGCTTCCTGTTGACCTGCACAAGGTCAGCCAGCAGACCTGGTACTCGAATGTTATAGGCCAAAGGTATAAAAAACACCAAAATCCCTGAACTTGTATTAGTGCGTgcacttatttatatatcttcAAACGTCCTCCTTCTTTGGGGCATGACAGGTGGCCCCCCAACTCCACCTGTCCATCCTTTTCCACAGCCACATGGTGGCGGACAAATCCAGAAAGGGATCAGTCATTCAAGAAATGGCATGCTGAAGTGCCACGGGGCCACGGAAGATCTCTGGATACCGGATCAGACGCAGCTGCCCCCCGGCTGCTATTTTCACTCAGCTTAAAGTACCATGGGCAGCCAGCATCTACGCCATGGACTACCCACAACTACCAGTCTGTCTCTGCACGCCATGAAGTCCACCGCAGGGGAGCACGAGCATCTTCCACACGATACCCAGAGCTTGCCCTCCGACCCTGATGAGCTCGACAGTGGCAGCGAAAGCTCTGAGAAATCCACCGGAGCAGGGAGCCCCACGCGGGGCCACAGGGAGGCGGGGAGACGCAGAGGGGGTCGTAGACTCGCAGGGGTGAGCAAACAACGCCAGGCAGCTAATGCTCGGGAGCGAGACCGCACACATAGTGTCAACACTGCCTTCACGGCTCTGCGTACCCTCATCCCTACGGAGCCGGCCGACAGGAAGTTGTCAAAAATCGAGACCCTGCGATTGGCATCAAGCTACATTTCACACTTGGCCAACGTGCTTCTGCTAGGGGAGGACTGCATGGACGGGCAACCGTGTCTGAAATATCACAACATCTTACAAGGCAACACCAACCTCAAAACTCCACCGGTTCGACCCATATGCACCTTCTGCTTGAGTAACCAGAGGAAATTGCTTAGAGATGGGGAAAAGCACACAACTGCGTGACGGCAGAAGTTCTCCCGAATGACCACTGCTACACAAAACGAGCAACAAGAAGAGAAACAAATCTGCACTTTTTCTGCATGCGTGTTCACTTTATCACTGTTTTGGTTAATGTAACCGGATAATATGTGTAAAGTTGCACCTGGTGGGAGGCTATTTCAGTATCAGATATAGTAAGCTACACCATCCCTCGCCTTAAAAAACAGTCTTGTGTCTGCCTCTTGCACGTCACATGATGGTAATTGAAACCTTGCGGTTTGCAGTGGTCGCTGTCAGTACTACGGTGGGTAAAAATCTCATCCCCTCCCTCTTGTCTCCACATCTACGACGGGACCACGATCCCAACATGGCTCTCGGGAGACTGTAAACAAGATTCTAACCTCAGCATGATAATTTGGGTTAGGCAAAgcatgcttaatatttattagaaaGTTCAAGTAGCACATGACTGAATTTTATAGGTGGAAATATTTTGTAGTGAGAACATCTTATGTCTTGGGAACTGTTGTTGGTCAAGGTACATGATCCTTAACACGAGCCATGGGTTATGACCCTGACCCCAAAAGTTTTATAGCGTTGCGGTCACATTCAGAGAACACACAGAGGTAACAATGTTGCATAGAATGTAGATTAGTAGTGCAGACCCTTGCAGAGGGTACGTTCTGAAAAGGGTACGTTGGGGTCACCCTGTAACAACAAACGGCATGCTTGCGCTTCTGAATCATGAAACACCAGATTCTTGTGTGAAAGAAGGCCATTTAAACAAGTTCAGCTCACGCTCACCAACATCAAAATAGAAGCTTGTtgcattgcatgcattttaagaCGTTACTGTTGTTAATGTTAGAGTGCGATTATGCAATCAATAACTCTACTATACATGATTGcacaaagctgtatttattcatatgtcAACATGGCTTTTTGTCCACTGATATGCACCAAATGAAACCAAGAACATGagacatttgtgttttaaaggagTAGATGGAAGTTTCACTAGCTGTTGCTAATTGCTCGATTTAAACATGTCAGTTCGATTTCAGAAAGTTTGACAGGTCTTGCTCAGATTGGTGCATTTCATGTTGACTAAGGTCTAGGGTAAAGGTTATAGAGCATGTGCTAATCTCAAGCGCACCACTAAAACAGCATCTGCTGAaccttgttttattgtttacattaaCGTAGCAAGTAGGAATAACAAATTTGAGCCTAACATGTACCGTGATTACAATTTTCAGATACTACACCTGCAGGGTGAATGTTTAAAAGGTAgaactatttttgtatttaacatcaagatgtaccatttttttttgtatccaaAATGTTTACCTGCATCTCTTGCACAAATAACTTCAGCTTACAGGTTTGTCTGAATCTGCAGATGGTGTAGAATgactcttcctttttttttttttcttcaatacaGATGTAAAAAAAGGTGCAATGGAAGTACCACAATGTACTGGAAATACTGTAATATGGCAAGGCTTTtgtaaatcttttgtaaatatttgcactttaacattaaaatttaagGTCAAAACACATAGTAACATGGCCTACCTTTAAAACAAGCCTGTCGTTTTCTAATACTTGAATTATCCGCTCTTTCGAAAAGTGGTCTTTTGCACAATGCCAAACAACAAGCTGCTATGTAAGCAAGTATTTttgtacaagaaaaaaaatgtctgcacTCATGACTTTCAaaccattaaattatttttgaaaaatgttctgAAAGTATTTAATCTCTGGTTTTGAGGTGCCCCCTAGTGGAAGTCACATTCCATGCGATTTTAAAATGGTGGACAAGTCTGAATTTGCAATAATCAGAAAAATAGCACGTCTGAgaaaataaagcacacaaaGCATATACTTCTAGgtctttatttcttaaaaaaagtcaattagTTATTCAGATTAAAGAAATCTGTGACAAATAAGATGGGAGATACATCATAGAAGAGGTTGGGAGTCATTTAAGGGTCTTTACAGGGTGATCAGCAATTTGTTTTCAGCGCTGTACAGTTTCATAGGCAGGGAACAGAACGCTGATGATGTCATGGGAGAAGGACTTAACCCTTTGGCAATAACATCACGATGAGACATGGTGACCGTTTCCCCCCCTTTGTGGACACTGATCATGACAGGGCATGAAGGCATCAATACCATAGAAAAGGGCGtcttaaaagcaaaaaaggcaGCCTGATCTAAATCAATGGAATGTCAATTCATAAAGGAATcattataacaataatttaagATGTCCAAACTGTGTCAACACTTAAAAGTTCCTTGAGTGAGTAAATCATTACAAAGGTTGACCACAACTTTTGtgctattttaaagtgtaaaccttaatattagaaaaatctgttaaaattaaCCATTTGTTATAAAGCCCTTAAATGACATCTAAATGTTAtggttttgagaaaaaaaaaaaagaggtagaatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaccc

Function

symbol description
si:ch211-246m6.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II.

NR:

description
basic helix-loop-helix transcription factor scleraxis-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223398.1 True 4179 mRNA 0.41 2 7537637 7542056
XM_043223399.1 False 4072 mRNA 0.41 3 7537637 7542060

Neighbor

gene id symbol gene type direction distance location
LOC122327064 LOC107751463,LOC107571702,LOC107687862,LOC107687887,LOC107739318,LOC107653569,LOC107565490,LOC107600988 coding downstream 12020 7524436 ~ 7525617 (-)
LOC122327123 LOC107687862,LOC107565490,LOC107751463,LOC107687887,LOC107571702,LOC107739318,LOC107653569,LOC107687863 coding downstream 14745 7521718 ~ 7522892 (-)
LOC122327121 LOC107751463,LOC107571702,LOC107653569,LOC107687862,LOC107739318,LOC107687887,LOC107565490,LOC107600988 coding downstream 18682 7517800 ~ 7518955 (-)
LOC122327800 LOC107751463,LOC107571702,LOC107653569,LOC107687862,LOC107739318,LOC107687887,LOC107565490 coding downstream 21736 7514739 ~ 7515901 (-)
aox5 aox5,LOC107600984,LOC107739315,LOC105905663 coding downstream 23233 7494661 ~ 7514404 (-)
si:ch211-246m6.5 si:ch211-246m6.5,LOC107751466,LOC107656682,LOC107600990,LOC107739341,LOC107653538 coding upstream 6290 7548350 ~ 7601080 (-)
LOC122327777 NA coding upstream 77290 7619350 ~ 7622439 (-)
LOC122328180 NA coding upstream 87887 7629947 ~ 7631701 (-)
si:dkeyp-122a9.2 NA coding upstream 117273 7659333 ~ 7661731 (-)
lrp1ba lrp1ba,LOC107757468,LOC107653541 coding upstream 119728 7661788 ~ 7889885 (-)
G150628 NA non-coding downstream 39148 7486176 ~ 7498489 (-)
G150626 NA non-coding downstream 52703 7483864 ~ 7484934 (-)
LOC122327668 arl4ca,arl4c,LOC107600967,LOC107739351,LOC105905671,LOC106575223 non-coding downstream 67493 7450248 ~ 7470144 (-)
G150596 NA non-coding downstream 114238 7409413 ~ 7423399 (-)
LOC122327085 NA non-coding downstream 241082 7290672 ~ 7296555 (-)
LOC122327778 NA non-coding upstream 82639 7624699 ~ 7628851 (-)
LOC122328071 NA non-coding upstream 105051 7647111 ~ 7652174 (-)
G150706 NA non-coding upstream 316263 7858323 ~ 7866902 (-)
LOC122327072 NA non-coding upstream 358528 7900588 ~ 7952064 (-)
G150735 NA non-coding upstream 523772 8065832 ~ 8066111 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 482075 7020754 ~ 7055562 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other downstream 598637 6822203 ~ 6939000 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other upstream 67796 7609856 ~ 7618398 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 744312 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 1058290 8600350 ~ 8612744 (-)
G151107 tal1,LOC107669848 other upstream 1342061 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 1471488 9013548 ~ 9171931 (-)

Expression


Co-expression Network