si:ch211-212d10.2 (si:ch211-212d10.2,LOC107728577,LOC107687719,LOC106613739,LOC101487565)


Basic Information

Item Value
gene id si:ch211-212d10.2
gene name si:ch211-212d10.2,LOC107728577,LOC107687719,LOC106613739,LOC101487565
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10044222 ~ 10047874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223412.1
AAGAAACAGCGAGGACGCCATTGTGAAATagctgtttttcttcatttttgtttgttgctgtAATCACAGAGAGCTTTATTCCTTGATTCTGAGTTATGTTTATTGTAATAAACCGGTCATTGTCGGCTTGTTTTAATTTCCTTCCCCATCCTCAATATTTGAAGCACTAGCAGAACCCCTCAAGCGCCTTATTTTTTATAATCGGCCTGCGTGATCTCAAACACACCTTTTCCGAGTTACGTTGCTTGGTTTAAACGTTTAAACATGTTCAAACATTTGAAATCGAACGTGATTATCGATATTTGCGTCGAAACGTCTGCACATTTTCATAGGGTCGTCTTCCCAGTCTTCTTTGGGGACCCCCCCCTTCGGCGACAAAGTGCAGTACAGCCTCCAGGAAGCGACAGGGAGAGCGGCGACCGTCGGCGAGGCGAAATCTATCGCGTTTAGTTAAAAGAAGATAATACAGCGCGTTAATGCCCCGCTTAAACGCACCTCTATGACTTCTCCCGAAGATGAGAGTGTTTCCTGGAGGCTAATAGGCCCCGTGTCGGAGCTGTCCAAGAAACAATGCCGACTGATGTATTCGTCTGACGGACGCGACGCGGATGTTTGCCTGTTTCACGTGAACGGCGAATTCTTCGCGATGGACGCGCGCTGCGCTCATTCGGGAGGTCCGCTGTGTGATGGAGATATTGAGGAGGCCGATGGTGTTCTTCAGGTTTTCTGTCCTTGGCATGACTATGACTTCAATCTCAAAACAGGGAAATCAAGCACAGGTTTACAGcaacaAGTTCATGAAGTGAAATTGGAAGACGGCAATATATACGTCAAGCACACGAGTGAGCTCTCGTTACAACCTTTCGGCCAGGTCAAGGAGAACTGAAGTTTTCGGTCACGGCAGTGTTTTGTTCCCTCGAACTGAAGCATCTGCTTGGATCTCGCAATATTTGAAAACGATGCAGAATTTGAGTTGAATAAACTTTCCTGTTCCCAATGGAGCAGTTGTTAACATTTGTGacaatttgtatatatacactacgAATCAGAGATAAATCGGTCTTTAATGTTGTACGCAAATGACTTCCAGTGACACTAAAGTGAACGTTGTTTTCTGCcatttagattatttattttatgatttatttaaattgttatgAATACCTTAAAATGTACGTTGGCAAAGTTTATATGCAAGATTGATCGAACTCAGGGAAAATGGGGTCACAGACTGTTTATTCAGTCAGCTGTACATTTCAGCAGCTTAATTAGTCATAGTTTAAGATTCATAATCGTTAGCACTCTAGAGATGTTAATGTGTTTCTCTCTAGGGCCGTAATAAATGTTTACGGTTGTAACTTTCCGTAATTATACCTTCTGAGATCCAGCCCTCTTGAGCGTCAGGTAGAAATGACTTTTTACCGCAGGGAAAAAATTAAAGGACTTAATTACTTGGTCGACTCACTTAATTTTGTGATTCCATGAGGTCTTCgtgaaaaaaataagtaaataaattcattcttATTTGAATCTTTCCATTTAATCACCATCAGTATTTGATTATCCTAcctttataaaatataagttaaTGGACAAAAGGTGGCTAAAGCTATGCGATGCTTAAACATTGGCTTTGAATACGTGGGCAGAAGTTAActcataaaaaatgcaaaatatttataatatattttatttatttttacaattttattaacagttgttttaaatggttAACAATTGTGATAAAGCCTGTGTTGTGTGCCTGCTTAtgatttctgtttatatttttgtgtaatttttttttttttttaagtttaatggAATAAAGCAATGTC

Function

symbol description
si:ch211-212d10.2 Predicted to enable 2 iron, 2 sulfur cluster binding activity; metal ion binding activity; and nitrite reductase [NAD(P)H] activity. Predicted to act upstream of or within nitrate assimilation.

NR:

description
Rieske domain-containing protein-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223412.1 True 1835 mRNA 0.39 3 10044222 10047874

Neighbor

gene id symbol gene type direction distance location
tssk6 tssk6,LOC107687737,LOC107728539,LOC107554804,LOC107599475,LOC107719648 coding downstream 49215 9994192 ~ 9995007 (-)
tmem161a tmem161a,LOC107728546,LOC107599454,LOC107719614,LOC107554814,LOC107687722 coding downstream 125306 9913423 ~ 9918916 (-)
tmem221 NA coding downstream 149255 9890550 ~ 9894967 (-)
rfxank rfxank,LOC107687741,LOC107554808,LOC107728547,LOC107719616,LOC107599486 coding downstream 156363 9886173 ~ 9887859 (-)
LOC122328188 ncan,ncanb,LOC107728538,LOC107687726,LOC107554802,LOC107719650,LOC107599474,LOC107097932 coding downstream 255847 9730641 ~ 9788375 (-)
cirbpb LOC107599461,LOC107655227,LOC107719610 coding upstream 27158 10075032 ~ 10080097 (-)
midn LOC107554818,LOC107728568,LOC107687715,LOC107655225,LOC107719606 coding upstream 103588 10151462 ~ 10173317 (-)
atp5f1d atp5d,LOC107728581,LOC107719603,LOC107554819,LOC107569937 coding upstream 135164 10183038 ~ 10187587 (-)
LOC122328192 NA coding upstream 346138 10394012 ~ 10396169 (-)
LOC122327734 celf5a,celf5,LOC107675909 coding upstream 419253 10467127 ~ 11650822 (-)
G151444 NA non-coding downstream 15783 10023218 ~ 10028439 (-)
LOC122327858 NA non-coding downstream 178334 9819693 ~ 9865888 (-)
G151319 hapln4,LOC107554801,LOC107728536,LOC107719665,LOC107599484 non-coding downstream 423057 9616790 ~ 9621165 (-)
G151289 NA non-coding downstream 579709 9426153 ~ 9464513 (-)
G151266 NA non-coding downstream 589875 9360531 ~ 9454347 (-)
G151439 NA non-coding upstream 6044 10053918 ~ 10072892 (-)
G151468 LOC107687734,LOC107728578,LOC107719602,LOC107655224,LOC107569929 non-coding upstream 141956 10189830 ~ 10194857 (-)
G151457 NA non-coding upstream 197044 10244918 ~ 10249842 (-)
G151507 NA non-coding upstream 327299 10375173 ~ 10375615 (-)
G151508 NA non-coding upstream 327767 10375641 ~ 10375960 (-)
G151425 NA other downstream 61075 9957811 ~ 9983147 (-)
gpx4a gpx4a,LOC108429535 other downstream 541216 9498669 ~ 9503006 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other downstream 872291 9013548 ~ 9171931 (-)
G151107 tal1,LOC107669848 other downstream 1157281 8884121 ~ 8886941 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 1431478 8600350 ~ 8612744 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 234148 10282022 ~ 10321663 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other upstream 371253 10419127 ~ 10422354 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other upstream 887178 10935052 ~ 10994952 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other upstream 1126269 11174143 ~ 11188692 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other upstream 1182100 11229974 ~ 11231249 (-)

Expression


Co-expression Network