rnf13 (rnf13,LOC107551383,LOC107568264,LOC106613488)


Basic Information

Item Value
gene id rnf13
gene name rnf13,LOC107551383,LOC107568264,LOC106613488
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17371155 ~ 17388079 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223414.1
tgtgactgtgtgtgtgtgtgtgtttggttctCTGTTGACATTCTGGCCTGCCAGACGATATGAGGTCGTACGAAGCAGCCTGAAGCCTATGATTTCGCTTTAACGCAATGTCCTCGGGGTTTATTATCTTCCTGGACTAAAGAACAGCATCTAATGTAATGGTGTAATCGAAGCGGGTCTTAAGATGCTGCTCTCTTTGGGGATGCTGATGCTCTCGGCCACACAGATTTACACCATTTTCACGGTTCAGATATTTGCCTTCCTCAATCTCCTGCCCGTGGAGGCCGATATATCAGCTtattcgtttgacaataaaacagaaaactttgATGACTTGCCAGCTCGGTTTGGCTACAGGCTGCCCAGTGAAGGACTGAAGGGTTTCCTGATCGGGGCCCGTCCTGAGAACGCCTGCGTGCCGATCGACCCCCCTCCGCTGCGGGACAACCTCAGCAGCGCCTTCATCGTGCTGATCAAGCGCTTCGACTGTAACTTTGACGTCAAGGTCCTCCACGCGCAGAAGGCTGGCTACAAGGCGGCGATTGTCCACAATGTGGACTCCGATGACTTAATCAGCATGGGATCCAATGATCTGGATATTCTGAAGCAGATAGACATTCCTTCCGTGTTTATTGGTGAAGAAGCGGCCAACTCTCTCAAAGAGGATTACGTCTATGAGAAAGGcGGTCATGTGATTCTCATGCCGGACTTCAGCTTGCCTCTGGAATATTATCTGATCCCGTTCCTCATCATCGTGGGAATCTGCCTCATCCTCATTGTAGTTTTCATGATCACAAAGTTCGTACAGGACCGACACAGAGCCAGGAGAAGCCGCTTACGCAAGGACCAGCTGAAGAGACTCCCCATTCACAAGTATAAGAAAGGTGATTCGTACGACGTGTGCGCCATTTGTTTGGATGAGTACGAGGAGGGTGACAAGCTGAGGGTTCTTCCCTGCTCACATGCCTATCACTGCAAGTGTGTGGACCCATGGCTGACCAAAACCAAGAAGACCTGCCCCGTGTGCAAGCAGAAGGTCGTGCCGTCCGACGGCGACTCCGACTCCGAGTCCGAGTCGGGCGACAGCGGCGGCGAGGACAACGAAGTGTCGGAAAACACGCCCCTGCTACGTTCTCTGGCCTCCACCAGCGCCCATTCCTTCGGCACCATGTCCGGCTCGCTGTCCCATCCCGACGCCGAATCCTCGGACTACGACGAGCGCAGCGACACCACCGACAGCGAGGAGGAGGTCACGGTGGAGACCGTGGTCGTGCAGCTGCAGCAGGGCCGCCCCGACAACATGGAGGCCAGCGCCTGAGCCGTTAGCCGACGCTGACTCGAACTCTCGACGAGATCCCTGTACGCGTTTCACCGTCACTTGCCGTTTATCGTCACAAATCCGTTTAACGTTCAGCAATACTATGCAGcgaaattttataaaatcaccCCCTGAGTGAAGTGCGCAGATTTTGCCGACTTGGTGAAACGTCGCCTTTGGGAATGTCGTTAGCGCTTGCTGCCAAACTCATCTCAGACCTGTATCCGATCGCGACCAACTGCATGTTTTATACGACACGTTAAGACTTTATTAGCGTCAACGTTTTAGTTTTGATCATTAACAGCGGAGCCGTTCTAAACGCCAGTGATTCGAGTGATCTTGGAAGTGTAGTTAAGTAATAACACATCATTTATATGCTGTAAGTAGGAAGTAACTCGGGTAAGTAGAATCGAAgggtttcgttttttttttttttgataacacGACGTGAACCGTTAACGATGTCTGGTTGCCTTTTAATGTTGCTTTGCTGTAAATATAAGTTTCTGCTCACCCTTGTTTCTAAATAGTCTGCATTCATTTCTCCATTAATAAAATACTACACATTTTGCTGATCGTG
>XM_043223415.1
gtgtgactgtgtgtgtgtgtgtgtttggttctCTGTTGACATTCTGGCCTGCCAGACGATATGAGGTCGTACGAAGCAGCCTGAAGCCTATGATTTCGCTTTAACGCAATGTCCTCGGGGTTTATTATCTTCCTGGACTAAAGAACAGCATCTAATGTAATGccgGTACAATTTGCTGATCGGAGAATAAAAAGGAAGTTTTTACATCACGTGTAATCGAAGCGGGTCTTAAGATGCTGCTCTCTTTGGGGATGCTGATGCTCTCGGCCACACAGATTTACACCATTTTCACGGTTCAGATATTTGCCTTCCTCAATCTCCTGCCCGTGGAGGCCGATATATCAGCTtattcgtttgacaataaaacagaaaactttgATGACTTGCCAGCTCGGTTTGGCTACAGGCTGCCCAGTGAAGGACTGAAGGGTTTCCTGATCGGGGCCCGTCCTGAGAACGCCTGCGTGCCGATCGACCCCCCTCCGCTGCGGGACAACCTCAGCAGCGCCTTCATCGTGCTGATCAAGCGCTTCGACTGTAACTTTGACGTCAAGGTCCTCCACGCGCAGAAGGCTGGCTACAAGGCGGCGATTGTCCACAATGTGGACTCCGATGACTTAATCAGCATGGGATCCAATGATCTGGATATTCTGAAGCAGATAGACATTCCTTCCGTGTTTATTGGTGAAGAAGCGGCCAACTCTCTCAAAGAGGATTACGTCTATGAGAAAGGcGGTCATGTGATTCTCATGCCGGACTTCAGCTTGCCTCTGGAATATTATCTGATCCCGTTCCTCATCATCGTGGGAATCTGCCTCATCCTCATTGTAGTTTTCATGATCACAAAGTTCGTACAGGACCGACACAGAGCCAGGAGAAGCCGCTTACGCAAGGACCAGCTGAAGAGACTCCCCATTCACAAGTATAAGAAAGGTGATTCGTACGACGTGTGCGCCATTTGTTTGGATGAGTACGAGGAGGGTGACAAGCTGAGGGTTCTTCCCTGCTCACATGCCTATCACTGCAAGTGTGTGGACCCATGGCTGACCAAAACCAAGAAGACCTGCCCCGTGTGCAAGCAGAAGGTCGTGCCGTCCGACGGCGACTCCGACTCCGAGTCCGAGTCGGGCGACAGCGGCGGCGAGGACAACGAAGTGTCGGAAAACACGCCCCTGCTACGTTCTCTGGCCTCCACCAGCGCCCATTCCTTCGGCACCATGTCCGGCTCGCTGTCCCATCCCGACGCCGAATCCTCGGACTACGACGAGCGCAGCGACACCACCGACAGCGAGGAGGAGGTCACGGTGGAGACCGTGGTCGTGCAGCTGCAGCAGGGCCGCCCCGACAACATGGAGGCCAGCGCCTGAGCCGTTAGCCGACGCTGACTCGAACTCTCGACGAGATCCCTGTACGCGTTTCACCGTCACTTGCCGTTTATCGTCACAAATCCGTTTAACGTTCAGCAATACTATGCAGcgaaattttataaaatcaccCCCTGAGTGAAGTGCGCAGATTTTGCCGACTTGGTGAAACGTCGCCTTTGGGAATGTCGTTAGCGCTTGCTGCCAAACTCATCTCAGACCTGTATCCGATCGCGACCAACTGCATGTTTTATACGACACGTTAAGACTTTATTAGCGTCAACGTTTTAGTTTTGATCATTAACAGCGGAGCCGTTCTAAACGCCAGTGATTCGAGTGATCTTGGAAGTGTAGTTAAGTAATAACACATCATTTATATGCTGTAAGTAGGAAGTAACTCGGGTAAGTAGAATCGAAgggtttcgttttttttttttttgataacacGACGTGAACCGTTAACGATGTCTGGTTGCCTTTTAATGTTGCTTTGCTGTAAATATAAGTTTCTGCTCACCCTTGTTTCTAAATAGTCTGCATTCATTTCTCCATTAATAAAATACTACACATTTTGCTGATCGTG

Function

symbol description
rnf13 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 73. Orthologous to human RNF13 (ring finger protein 13).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF13

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223414.1 False 1898 mRNA 0.50 10 17371156 17388079
XM_043223415.1 True 1947 mRNA 0.50 11 17371155 17388079

Neighbor

gene id symbol gene type direction distance location
srfa srfa,LOC107568266,LOC107679061,LOC107720394,LOC107551382,LOC107706117 coding upstream 1258 17353817 ~ 17369897 (+)
dag1 dag1,LOC107592827,LOC107757307,LOC107691879,LOC107564392,LOC107708488,LOC107678152 coding upstream 301188 17040662 ~ 17069967 (+)
rbm15b rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039 coding upstream 614225 16752903 ~ 16756930 (+)
manf manf,LOC107677041,LOC107691893,LOC107592842,LOC107750980,LOC107567190,LOC107708486 coding upstream 618401 16750713 ~ 16752754 (+)
grip2b LOC107719945,LOC108436697,LOC107720331 coding upstream 893544 16382185 ~ 16477611 (+)
rubcn LOC107720396,LOC107732676,LOC107701215,LOC107568258,LOC107679062,LOC107551360 coding downstream 34039 17422118 ~ 17438914 (+)
dynlt2b tctex1d2,LOC107701222,LOC107732663,LOC107744197,LOC107551376,LOC107565470 coding downstream 102665 17490744 ~ 17492655 (+)
hykk.2 hykk,hykk.2,LOC107732649,LOC107744196,LOC107551378 coding downstream 121649 17509728 ~ 17520426 (+)
LOC122328058 hykk,hykk.2,LOC107732649,LOC107744196,LOC107551378 coding downstream 128051 17516130 ~ 17520426 (+)
LOC122327646 ephb3,LOC107668659,LOC107687281,LOC107732650,LOC107744192 coding downstream 308796 17696875 ~ 17741017 (+)
G153610 NA non-coding upstream 298219 17072514 ~ 17072936 (+)
G153583 NA non-coding upstream 565547 16805182 ~ 16805608 (+)
G153569 NA non-coding upstream 611575 16759145 ~ 16759580 (+)
G153568 NA non-coding upstream 613028 16757795 ~ 16758127 (+)
G153504 NA non-coding upstream 804485 16566052 ~ 16566670 (+)
G153645 NA non-coding downstream 31645 17419724 ~ 17419944 (+)
G153647 LOC107568254 non-coding downstream 53794 17441873 ~ 17442179 (+)
G153653 NA non-coding downstream 83821 17471900 ~ 17472846 (+)
G153654 LOC103364560,LOC102213549,LOC105896408 non-coding downstream 85162 17473241 ~ 17474600 (+)
G153737 NA non-coding downstream 495534 17883613 ~ 17883921 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other upstream 621227 16600630 ~ 16749928 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other upstream 871742 16493702 ~ 16499413 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other upstream 984979 16317387 ~ 16386176 (+)
LOC122327131 NA other upstream 1199526 16163383 ~ 16171629 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other upstream 1292260 16077581 ~ 16078895 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other downstream 11226 17399305 ~ 17419244 (+)
G153741 LOC107661227 other downstream 538272 17926351 ~ 17927244 (+)

Expression


Co-expression Network