G14878


Basic Information

Item Value
gene id G14878
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3683322 ~ 3684468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU16643
TAATAACTCAAATCATGCCACTTATTGAGAAGAGGTATTCTTTTATTGATCTTTCAACTTTTATTTACCTGGCAGACAAAAAAAACTGGCAGAAAAATACCACAGATATGCGTTAAAGGAGGGACTTAAGCCATATTAGAGCCATATAGAGACAAGGTCATAGACTTAGATATTGGCTCTTTAACCATCTAGTAACCACCCCAGGAATCCTTAACAACCTCATAGCAACATGCTGTCAACCCCTCGACTCTCCTTAGAAACCACATGTTTGTGAAGTAAATGTTTACACGGCTTTTTAAAAATGCTGGTTGCCGGTGTTTGACATGCGTTTGACAAACCAACGTACACTTACATCACTGATAGTTCCTATAGTGCTGGTTTAGACCCTACTCTGGGTCTAATTTAGTTCCCTAATAAGGAGTAAAATCGTTCCTTGTTCCTGCGTTGCAAACACGGCAAAATGATCCCAGGAAACCATCTACAACAGCCTAGCATCGTAGCCAGTGTTTGCACAGAAATTATACGTAATTATGCTGTGTCATGATTGATGTTGTTATCACATCAAGCTCCCTCTTATGTCACACTATTATATCAATTCCTGACAATATAAACATTTCTAAAAAATGACTAAATAAACACAATTTAAGCCTCAAAATTTTTTGAGCTAAATAACTAAATAAGGTGCATGCCTTTTTCCATTCAATGTTTTCTCGTGGAACTTAGAAAGTTTCCTTCATAGGCAACGGAAACAACTTCATGTTCTTGTTCCAGTGAAGTAACATAAGGACCAATGGAGGAAAAAACACAAAGGCTACCATGACAGCTGAAAAAATATCGGTGTGTGGGGACATTTGTGTTGTAAACACTGTGCACTGAACAGTGCTAGTAGTGACTCATTTTGTAAACAGTTTAGCTGATAACAACCACTTGTTGCTTTGTTGTTACTTTTGGTTATAGCAACATAGTAACTGCTGTATAGCACATTACATTTAATTAAAAATTGCTGAATGGATGTTAGAACCTAACTAACGTTAGATAGATGCTAGTTCCTTTCATTTTCTTAAATAGAGTGTAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16643 True 1080 lncRNA 0.39 2 3683322 3684468

Neighbor

gene id symbol gene type direction distance location
CI01000001_03669438_03673748 CSRNP2 coding upstream 9535 3668725 ~ 3673787 (+)
CI01000001_03650790_03662852 LSF, TFCP2, TFCP2.L coding upstream 20378 3650636 ~ 3662944 (+)
CI01000001_03638240_03647295 POU6F1 coding upstream 35642 3638240 ~ 3647680 (+)
CI01000001_03618075_03620436 NA coding upstream 61890 3618075 ~ 3621451 (+)
CI01000001_03609191_03615121 NA coding upstream 67906 3609191 ~ 3615416 (+)
CI01000001_03719251_03775929 ITGA5 coding downstream 33722 3718190 ~ 3776425 (+)
CI01000001_03821989_03823336 SLC48A1A coding downstream 137521 3821989 ~ 3823584 (+)
CI01000001_03830254_03833027 NA coding downstream 145786 3830254 ~ 3833027 (+)
CI01000001_03865986_03866675 NA coding downstream 180889 3865357 ~ 3867469 (+)
CI01000001_03867875_03890850 NA coding downstream 183372 3867840 ~ 3890989 (+)
G14873 NA non-coding upstream 49739 3633093 ~ 3633583 (+)
G14842 NA non-coding upstream 58692 3621578 ~ 3624630 (+)
G14856 NA non-coding upstream 99280 3583116 ~ 3584042 (+)
G14836 NA non-coding upstream 133164 3548776 ~ 3550158 (+)
G14741 NA non-coding upstream 148099 3531198 ~ 3535223 (+)
G14911 NA non-coding downstream 156675 3841143 ~ 3841354 (+)
G14912 NA non-coding downstream 160001 3844469 ~ 3844841 (+)
G14917 NA non-coding downstream 167363 3851831 ~ 3852048 (+)
G14931 NA non-coding downstream 194051 3878519 ~ 3878797 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2012318 1667762 ~ 1671167 (+)
G13051 NA other upstream 2638170 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3191265 483853 ~ 488825 (+)
G12614 NA other upstream 3372381 309144 ~ 310941 (+)
G15794 NA other downstream 1376750 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1602281 5279837 ~ 5287698 (+)
G15995 NA other downstream 2027417 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3848104 7531541 ~ 7540586 (+)
G17234 NA other downstream 4347656 8032124 ~ 8032483 (+)

Expression


Co-expression Network