tm2d1 (tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044)


Basic Information

Item Value
gene id tm2d1
gene name tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8995971 ~ 9004905 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223444.1
ATGGCGTCGCGCTGGAGGAGTTTGTTGCGCTTGCAGTCAACAACACAGCCGCTGATCATCTTTACCTTCTGCCTGACCATCCTCCGCAGCCTCGGGGACGATGTGGACAGCTGTGATAAACTGCAGCTGGGACAGTATGTGTGTAAAGAACCTAAAATAGATGATGCAACTCAAGAACCAGAAAACTGCAAGGACCGCTTGGCTTGGGTGGAATGTCTACCTGCTCCAAACATCAGCTGTCGTCTGTCAAATGGAACACAGTTCAAATTCAGCGGTGAAGAGGTCGGCTTTAACAAGAGCATCCCATGTCGAAATGTGAGTGGTTACTCGTACAAAGTAGCCGTTGCTCTGTCACTCTTTCTGGGATGGATTGGGGCGGATCGGTTTTACTTGGGATATCCAGCCTTGGggcTACTGAAATTCTGCACTGTGGGGTTCTGTGGAATTGGAAGCTTAGTGGATTTCATGCTGATATCTATGCAGATCGTGGGTCCATCAGATGGGTCGGATTACATTGTGGACTACTATGGGGCACGCCTCACCCGTCTTTCGATAACAAATGAGACCTACAGAAGAACGCAGCTCTCTCCATGAAAGACACTAGGTGGATCCCAATGAGATGACCCACCAAATGTACAGGATTGTGTTATGTAAATCCCATCTTTTCTTTGGACATGCCTTTGCCGTTttcaaacacaaagacacatgGACGTGCCAAACCATGCTCTGGGAAAGACTAGCCCATGTCTGGAGTTGCAAACATTGTTCATGTATGTGCTGAGCTAGCATTGGTCTCGCTGCTCCAAATTCTGCTAGGATCCACGTGTAGCTGTTTTTTTCCACTTATGTCCTCTATCACTCTTTATCCATCTCTCCATCAATCAATTTCCTCCTTTGAGTCATGCTGGTGGAATGTCAACcatatttagtttcttttcaTTCCTATCCTCTCTAGCTTCACATTGTTGGACATTGTGTGATGTTTTGATGTTATttaaacactgtaaataaagttttattatca

Function

symbol description
tm2d1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TM2D1 (TM2 domain containing 1).

NR:

description
TM2 domain-containing protein 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223444.1 True 1024 mRNA 0.46 7 8995971 9004905

Neighbor

gene id symbol gene type direction distance location
tal1 tal1,LOC107669848 coding upstream 109543 8880269 ~ 8886428 (+)
ier5 ier5,LOC107731541 coding upstream 135902 8858464 ~ 8860069 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding upstream 148915 8828910 ~ 8847056 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding upstream 176377 8813432 ~ 8819594 (+)
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding upstream 183105 8807166 ~ 8812866 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding downstream 193119 9198024 ~ 9223536 (+)
atpaf1 atpaf1,LOC107653579,LOC107715059 coding downstream 218905 9223810 ~ 9227301 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding downstream 223503 9228408 ~ 9235230 (+)
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding downstream 231194 9236099 ~ 9248034 (+)
axdnd1 axdnd1,LOC107669794,LOC107653552,LOC107728533,LOC107578687 coding downstream 243782 9248687 ~ 9257262 (+)
G150967 NA non-coding upstream 488 8995206 ~ 8995483 (+)
G150964 NA non-coding upstream 13615 8982116 ~ 8982356 (+)
G150963 NA non-coding upstream 14206 8981487 ~ 8981765 (+)
G150962 NA non-coding upstream 22065 8973646 ~ 8973906 (+)
G150959 patj,inadl,LOC107669802,LOC107731530,LOC107715056 non-coding upstream 22686 8966543 ~ 8973285 (+)
G150969 NA non-coding downstream 8629 9013534 ~ 9013852 (+)
G150970 NA non-coding downstream 20996 9025901 ~ 9029910 (+)
LOC122327612 NA non-coding downstream 63827 9068732 ~ 9071172 (+)
G150983 NA non-coding downstream 140306 9145211 ~ 9147388 (+)
G151163 NA non-coding downstream 272785 9277690 ~ 9283004 (+)
G150965 NA other upstream 7280 8988186 ~ 8988691 (+)
G150946 NA other upstream 74004 8921698 ~ 8921967 (+)
G150945 NA other upstream 76191 8919279 ~ 8919780 (+)
G150940 NA other upstream 93660 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 103772 8890622 ~ 8892199 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 449933 9454838 ~ 9530165 (+)
G151232 NA other downstream 572774 9577679 ~ 9580151 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 883258 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 890536 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 918642 9923547 ~ 9963634 (+)

Expression


Co-expression Network