LOC122327821 (LOC107726539,LOC107728585,LOC107675904)


Basic Information

Item Value
gene id LOC122327821
gene name LOC107726539,LOC107728585,LOC107675904
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10400426 ~ 10401727 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223452.1
AAGAGCTCACTGATTGTCTTCATGATGACCATCACCTCTCTGCTCCTGCTGATCTCTCTGCTGCCAAACCTAACCTTCACCGttcatGTGAAGGGGGGTATAGTGAACGGCACAGAAGTAAAACCCCACTCCAGACCTTTCATGGTTTCTCTTCAGAAGAACTGGAGACATGCCTGTGGTGGATTCCTCATTTCTGATAGATTTGTTATGACTGCTGCACACTGCTGGAAAAATGAGAAACTAACGGCCGTGGTTGGTGCACACGACCTAAGACAGGACGACAAATCTGTCCGCATTGGTGTGAAGTCCTACCACGTGCATCCAAAATTCAACAAGCACACTTTGCAGAACGACATTATGATTTTGAGGctAAAGAAAGAAgtcaaagaaaacaagaatgTAATGAAGATTTCCATATCAAAAGAAGAGACAGACATCAAAGCTGGTTCTGTCTGCAGTGTAGCTGGCTGGGGAAGACTGAGCTTTAACGGGAGAAAGAGTTATCGTCTCATGGAAGCAAATGTGAAGATCATGAATAACactgaatgcaaaaataaatggaaaaacaacttttttgccTCAAAGATGATCTGTGCCCATGGCCATGGAGGAAGCtgtaagAAGGATGGAGGAGGTCCTTTGGTTTGTGGATACACTGCAGTCGGTGTCACTTCCTTTGGTGACCCAAAAATCTGCAATAATCCTGAACGACCTGTAGTTTATATAAAGATTTCAAAATACTATGAGTGGATCTGCTCGATTATATCAAATATTGTAAGTGGTGCTTATTAATGCAGCCTACTTCTATTATAAGGATTCATGTAACTAAAATTACTTCTAGGTTCCTGTTTGCTTTGACCTCACATATGTGTTAatgcatgtatgttttaaatgtgttgtaGACTGCGATGTTAATATGCATACTCATGATATCTTTGCATTGGAA

Function

NR:

description
PREDICTED: granzyme-like protein 1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223452.1 True 946 mRNA 0.41 5 10400426 10401727

Neighbor

gene id symbol gene type direction distance location
LOC122327181 NA coding upstream 878 10398269 ~ 10399548 (+)
LOC122328190 LOC107728585,LOC107675904,LOC107726539,LOC107675906,LOC107569043,LOC107728545 coding upstream 7555 10385363 ~ 10392871 (+)
LOC122327872 LOC107728585,LOC107675904,LOC107726539,LOC107675906,LOC107569043 coding upstream 17647 10381507 ~ 10382779 (+)
LOC122328210 LOC107728584 coding upstream 21736 10376708 ~ 10378690 (+)
LOC122328213 NA coding upstream 26300 10372204 ~ 10374126 (+)
LOC122327820 LOC107675898,LOC107726531 coding downstream 5418 10407145 ~ 10408483 (+)
LOC122328194 NA coding downstream 8530 10410257 ~ 10412454 (+)
LOC122328195 LOC107726533,LOC107596895 coding downstream 11622 10413349 ~ 10418216 (+)
hsd11b1la hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913 coding downstream 21161 10422888 ~ 10426307 (+)
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding downstream 55478 10457205 ~ 10463197 (+)
G151487 NA non-coding upstream 51540 10347829 ~ 10348886 (+)
G151382 NA non-coding upstream 211254 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 212843 10185635 ~ 10187583 (+)
G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding upstream 237980 10151480 ~ 10162446 (+)
LOC122327864 NA non-coding upstream 260272 10137300 ~ 10140154 (+)
G151592 NA non-coding downstream 264329 10666056 ~ 10669212 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding downstream 299895 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding downstream 307317 10709044 ~ 10709110 (+)
G151603 NA non-coding downstream 308786 10710513 ~ 10711972 (+)
G151624 mbd3,LOC108427158 non-coding downstream 376000 10777727 ~ 10840314 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 406985 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 436792 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 489633 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 506919 9888163 ~ 9893507 (+)
G151232 NA other upstream 820275 9577679 ~ 9580151 (+)
G151620 NA other downstream 404325 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 472701 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 516362 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 533308 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 916380 11318107 ~ 11328230 (+)

Expression


Co-expression Network