fgf22 (fgf22,LOC107687712,LOC107569930,LOC107719646,LOC107655219,LOC107728567,LOC107569044)


Basic Information

Item Value
gene id fgf22
gene name fgf22,LOC107687712,LOC107569930,LOC107719646,LOC107655219,LOC107728567,LOC107569044
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10325575 ~ 10347666 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223453.1
TTACTTCTGTACATACTAACTTGTATTGTATATTAACTTGTTATTTACCTGATGATTAACTTCCTCAGAAACTGTAAATCACTTGTGATGGCAACAGTTTATTTTGGTTCAGGGCGGGATGTGAAGTGATATGGCACATCTGAGGAAGAACAGTATCCTGAAGGGAAATGAATTACAGTATGATAAAGGTAAACAATTTTAAGAGTGACATTTACTTTGATTATGAATAATCCAGGCCCCACCCATCTCCTCCCAGTCCCCCAGATGCAAGCCCTGCCCTGAATAAAATGCAGGAAAGGACTGAGCTACCCCACCAAAGAGCAGGCAGACAGCAAGgcacagagagtgagagagagaaagacacccATTTACAGCTTTACTGCCTTGTTGAGTCCGTCAGACTTACTCTcatcctctccctctctttctctaggtagcctttttacattttctcttacacagacacacaggcacTCATTGAAATACACTCATTCAACTCAGCTCATTCACAGGCACGGGTCAGGCAGCCTCACATTTCACCTTGCTCTGCCCCTGGCTGAGAGGAGAGAGCCCTGCAAGGTGCAGCCATCACACAGGACACTGGATCCCGCAACTCTGTCAGCTTGGACCGAGGGACCCGGATGCTCCAGGACAATCTAACAAGATCGAGACCATTTCTTTGGGATGGAATTTCAAAGTTCTCATTCATCATTCTGAAGAGCAAGACCAACAGACTAAAGTAATACACTTGAGTTTGAAATTGGTCACTCAGGATTTTTTACCCTCTCTTCCCATGTTCCTGCTCAGGGCTTCTGCGTGAGGCAGAGTGCCCAGCGAAGACCAGCATCATGCCGACTACTTGTGCAAGGTGCTCCTTGGGAGTCTGACCCATCATGTGCAAATGGACACCTACTACCGCTGGTCTCCACTCCGACCTCACCTTTGCCGGCTCAGCCCTCTGTTCTTATCCTTTTCCCTTTTTATGCCTGTCCCTGCTCTTTCTGGCTGGCTCTTCTCTTGGAGGTTGCCCACCTGCACTGGGGCATGACCCCCTTCAAGCGCTGGCACAGGGCACAAACTGCTCATGGACACTGGAGCGGCACACGCGCAGCTACAACCACCTTGAGGGTGACGTCCGCCTTCGGCGTCTCTATTCCGCCAACAAGTTCTTTCTCTGCATCGACAAGACAGGCAAGGTCGATGGCACCCGGCGAAAGAATTACCCTGACAGTCTGATGGAAATCCGATCTGTCAGTGTGGGAGTTGTCGCCATCAAATCTGTCAGCACCGGCCTGTACTTAGCTATGTCCAAAAAGGGAACGCTCTTCGGATCGGTCAGATACAGCCCCAGCTGCAAGTTCAAAGAGCGCATCGAAGAAAACGGCTACAACACCTATGCCTCCCTGCGCTGGAAGCACAAGGGGAGGCAGATGTTTGTGTCGCTGAACGGCCGAGGGAAACCCCGCAGAGGCCACAAAGCTAGACGGAGACACCCATCTACTCATTTCCTCCCTATGCTGGCCACATAGCTGGACTTATGAGCAATGCTATGCCATCTGCACTTGATGGGGacttattaaatgttattaagttctggtttgtctgttttttttttttttttttcctgagtaCTGTCGCACAGTACATTAACTTATTACTGTGTCTTCTGGCTCAGCTTAAGACCCAGTACATTTTAAAGCGAGGGTGTTAATATGATGTATATACAGGTTACGTATTAATGTTATTGTTGAGTTAACTAGGCATTTTACTGCATCTATCTGTTATCCTGTTATGGCTGATTTCTGATTGACATCGCCAACCTAGTCTCATTGtaaaaaacatactgtatatacaattcactgcagtttccaactgaaatgaacactagtgGCAGTAAAATGGTGGCattttgtacattataaaagactgtgctcttctttttaaaaaacaaaactctcaAAACCAGCTATACCATTCAAAAGG
>XM_043223454.1
TTACTTCTGTACATACTAACTTGTATTGTATATTAACTTGTTATTTACCTGATGATTAACTTCCTCAGAAACTGTAAATCACTTGTGATGGCAACAGTTTATTTTGGTTCAGGGCGGGATGTGAAGTGATATGGCACATCTGAGGAAGAACAGTATCCTGAAGGGAAATGAATTACAGTATGATAAAGGTAAACAATTTTAAGAGTGACATTTACTTTGATTATGAATAATCCAGGCCCCACCCATCTCCTCCCAGTCCCCCAGATGCAAGCCCTGCCCTGAATAAAATGCAGGAAAGGACTGAGCTACCCCACCAAAGAGCAGGCAGACAGCAAGgcacagagagtagcctttttacattttctcttacacagacacacaggcacTCATTGAAATACACTCATTCAACTCAGCTCATTCACAGGCACGGGTCAGGCAGCCTCACATTTCACCTTGCTCTGCCCCTGGCTGAGAGGAGAGAGCCCTGCAAGGTGCAGCCATCACACAGGACACTGGATCCCGCAACTCTGTCAGCTTGGACCGAGGGACCCGGATGCTCCAGGACAATCTAACAAGATCGAGACCATTTCTTTGGGATGGAATTTCAAAGTTCTCATTCATCATTCTGAAGAGCAAGACCAACAGACTAAAGTAATACACTTGAGTTTGAAATTGGTCACTCAGGATTTTTTACCCTCTCTTCCCATGTTCCTGCTCAGGGCTTCTGCGTGAGGCAGAGTGCCCAGCGAAGACCAGCATCATGCCGACTACTTGTGCAAGGTGCTCCTTGGGAGTCTGACCCATCATGTGCAAATGGACACCTACTACCGCTGGTCTCCACTCCGACCTCACCTTTGCCGGCTCAGCCCTCTGTTCTTATCCTTTTCCCTTTTTATGCCTGTCCCTGCTCTTTCTGGCTGGCTCTTCTCTTGGAGGTTGCCCACCTGCACTGGGGCATGACCCCCTTCAAGCGCTGGCACAGGGCACAAACTGCTCATGGACACTGGAGCGGCACACGCGCAGCTACAACCACCTTGAGGGTGACGTCCGCCTTCGGCGTCTCTATTCCGCCAACAAGTTCTTTCTCTGCATCGACAAGACAGGCAAGGTCGATGGCACCCGGCGAAAGAATTACCCTGACAGTCTGATGGAAATCCGATCTGTCAGTGTGGGAGTTGTCGCCATCAAATCTGTCAGCACCGGCCTGTACTTAGCTATGTCCAAAAAGGGAACGCTCTTCGGATCGGTCAGATACAGCCCCAGCTGCAAGTTCAAAGAGCGCATCGAAGAAAACGGCTACAACACCTATGCCTCCCTGCGCTGGAAGCACAAGGGGAGGCAGATGTTTGTGTCGCTGAACGGCCGAGGGAAACCCCGCAGAGGCCACAAAGCTAGACGGAGACACCCATCTACTCATTTCCTCCCTATGCTGGCCACATAGCTGGACTTATGAGCAATGCTATGCCATCTGCACTTGATGGGGacttattaaatgttattaagttctggtttgtctgttttttttttttttttttcctgagtaCTGTCGCACAGTACATTAACTTATTACTGTGTCTTCTGGCTCAGCTTAAGACCCAGTACATTTTAAAGCGAGGGTGTTAATATGATGTATATACAGGTTACGTATTAATGTTATTGTTGAGTTAACTAGGCATTTTACTGCATCTATCTGTTATCCTGTTATGGCTGATTTCTGATTGACATCGCCAACCTAGTCTCATTGtaaaaaacatactgtatatacaattcactgcagtttccaactgaaatgaacactagtgGCAGTAAAATGGTGGCattttgtacattataaaagactgtgctcttctttttaaaaaacaaaactctcaAAACCAGCTATACCATTCAAAAGG

Function

symbol description
fgf22 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within cell proliferation in midbrain; midbrain-hindbrain boundary development; and roof plate formation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm. Is expressed in midbrain; midbrain hindbrain boundary; midbrain hindbrain boundary neural rod; otic vesicle; and telencephalon. Orthologous to human FGF22 (fibroblast growth factor 22).

NR:

description
PREDICTED: fibroblast growth factor 10

GO:

id name namespace
GO:0033278 cell proliferation in midbrain biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0021509 roof plate formation biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223453.1 True 1983 mRNA 0.46 3 10325575 10347666
XM_043223454.1 False 1895 mRNA 0.46 4 10325575 10347666

Neighbor

gene id symbol gene type direction distance location
hcn2b hcn2b,LOC107569045,LOC107569931,LOC107719599,LOC107655221,LOC108429559 coding upstream 46122 10250867 ~ 10279453 (+)
bsg bsg,LOC107728565,LOC107719600,LOC107569932 coding upstream 75714 10239077 ~ 10249861 (+)
fstl3 fstl3,LOC107687713,LOC107728592,LOC107569933,LOC107655223,LOC107554822,LOC107719601 coding upstream 94266 10223590 ~ 10231309 (+)
cbarpb LOC107655224,LOC107554820,LOC107719602,LOC107728578,LOC107687734 coding upstream 116790 10189214 ~ 10208785 (+)
si:ch211-212d10.1 NA coding upstream 252723 10070816 ~ 10072852 (+)
LOC122328212 LOC107728582,LOC107687738 coding downstream 6180 10353846 ~ 10355418 (+)
LOC122328211 NA coding downstream 12460 10360126 ~ 10362209 (+)
LOC122328214 NA coding downstream 21429 10369095 ~ 10370513 (+)
LOC122328213 NA coding downstream 24538 10372204 ~ 10374126 (+)
LOC122328210 LOC107728584 coding downstream 29042 10376708 ~ 10378690 (+)
G151382 NA non-coding upstream 136403 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 137992 10185635 ~ 10187583 (+)
G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding upstream 163129 10151480 ~ 10162446 (+)
LOC122327864 NA non-coding upstream 185421 10137300 ~ 10140154 (+)
G151358 NA non-coding upstream 242955 10081782 ~ 10082620 (+)
G151487 NA non-coding downstream 163 10347829 ~ 10348886 (+)
G151516 NA non-coding downstream 40884 10388550 ~ 10421036 (+)
G151592 NA non-coding downstream 318390 10666056 ~ 10669212 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding downstream 353956 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding downstream 361378 10709044 ~ 10709110 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 332134 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 361941 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 414782 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 432068 9888163 ~ 9893507 (+)
G151232 NA other upstream 745424 9577679 ~ 9580151 (+)
G151620 NA other downstream 458386 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 526762 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 570423 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 587369 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 970441 11318107 ~ 11328230 (+)

Expression


Co-expression Network