vasna (vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741)


Basic Information

Item Value
gene id vasna
gene name vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12485205 ~ 12503977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223457.1
AGAGTATAAGGGAAACGTGTGCTTCGTCCTCTATACTGAGAATAAGCAATGACGTGTTTTGCCCGCGAAATAATGTGACGCGGATTAAAGAAACGTTACATTACAAACTACCGCATATACGCATGGTGGCGTTAGGTTATGGTTTCTAGTATGGTGTGTTGTTGGGAACATACCCCTTGTCACCACAGCCTGGCGACGGAGAGTTGTGTCAAGCCTGGACAGCTTCGCTCCTCCTTCCTAAAACTCCGGAGGTGTTGCGCTCCTGCCATTCAGTAAAAACACCGTCGCGTTCCTGAAGCTCAGACGTCTGCCTGGACGCAACCTGTACGGAACGGGGAGGCTCCGTGTGCGCGCCGTATGGTGATGTATGCCGCAACTTCCCTTCAGGAGACACTGTTCCTGCCCGATGAGTGACCGCGCAAGAGTCCTGAACGTCGTTCTTTGATCGCGCTACTTTTGTGGATAAAACAACGCGCGTTTTACGGGATTCAATCACAAAGGCTAGACAGTAATCAGCGATGCGACCATTATCTCCCCTGTGTCATCTCATCTTGTTTCACTTACTGTGTGGATCTCTGAGTAGCAGATGTCCTCAAGAGTGCTCATGCATTGCTGTTACTGCCATCTTCTGTGTCCAGCAGAACTTGAGCAACATGCCTCGTGGCCTGCCATCATCCGCAAAGGACATCTTCGTCTTTCAGAACAATATCATCACCTTGCAAAAGCAGGACTTTGTAGAGCTTGGCGAGATTGTAATGCTAGACTTAAGTCAGAATGCCGTCAATGAAATCCCTGATGGGGTGTTCAGCCCACTCTCCTCTCTACACAACCTGGATCTCTCTTCCAACCATATCACCCACATTTCCAAAGACAGCTTTGCTGGACTGGTTAACCTGGAAAGGCTGTATCTCTACAGCAACCGCATTCAGAGCATTCACCCAGCTGCATTTGAGGGACTAGAGAATCTACTGGAGCTGAAGCTACAGGGGAATCAGATTAGTGTGTTGCCAGCTTTGAAACTGCCCAAGCTGCTCCACTTGGACCTTAGTTATAATAGTATCCCACCTATTGGACCTAAAGATTTACAGACACCACACCTTGAGTCTCTTAAAATAGCTGGACTGCGGTTGACCAGTCTGGATGAGGATCTGCTAAGCAGCCTGGTGAACCTACATGTTCTGGATGTTTCCCAGAACCTGCTTGTAGAATTTCAACCTACAGTAAAGGTAATGGGAGGTCTACGAAACCTCAATTTAACTGGGAATCCCTTGGGTTCCCTAAAACACGAAGACTTCCAAAATTTGGCTAATTTACTAGAGCTTGACTTGAGCAACCTTAATTTGCAAGGCTTCCCCGAGGGCTTCTTCGGCCTTTTTCCCAAACTTGAGAAACTCACTGCAGCAGAAAACCCCTTTAACTGCCTTTGCCCACTTGCCTGGTTTCCAGCATGGGTAAAAGATGCCCAAATAGAACTGCTGAGAATGGAGGAGACTCGTTGCCACTTTCCACCAATAACCTCAGGAAAGGTTTTGGCAAAGTTGGAACATAAAGATTTTGGCTGTCCCACTACCACCATTGAGTTAACAAGCGCAGGGACAAGCAGTACAACAAGCAAGCCAACAAACTCCACCACACCATCAGTTACAACGCATGCCATTCCTCCGGCGCCACCAAGTGAGAAGCCCTCAAAAGACACAGATAGCTTTCCTCTTTCACATACCACTGCCTTCCCCAGAGACATCATAGAAGATTCTGAAGAAGAAGACATTATATGCCCCTCCAATATCTGTCTAAATGGGGGAACATGTGTATTTGACTCAAATGGGGAGGTTGTTTGCCTGTGTCCGCCTTCAATGTCAGGACTCTACTGTGAGATTCAAAATCCAAGCTTCCTTCCTCCACCTTCACCTAGAGTTTCTATCGAGACCATTGCTACAGTCCAGCCCAGCACAATCAGCTCCCTTCACATAACCAGCACTTCCATTTCATTAGACCTTCATCGTTACATCCACACACGACCACACATCCGAGGAATCCGTCTGACCTACCGAAACTTGTCAGGCCCCGACCGACGGCCATTACAACTGAATGTGCCTCCAACTTACCCTGAATACACGCTTAGAGGGTTACAGCCAAATAGCACCTATTCTGTATGTGCTAGTCCTCTAGGAGAGCCTGTCCATGTTTCGGTTAGTGCCTGCATGGAGGCTCGCACAGCAGGAATCCCACCCTCCTTCCATGAGCCAAGTGTTGACAGGACCGAACCTTCTTCCTCTCTCATACCCATCGTGGCAGCTGTGGCGGTGGTGATGGTTGTGGCCATCGTAGCTACTGTCGTGGTTATCTGTCGCAGGAGGAGACCCAAGGCTCCAGTGGATGTGGACTTACATGAGACATCTCCTTTGGAGGTAGAGGGAGTGAAAACAAATCCAGAGAACGGTCTGATACATCCGAAACAACCCGACATCACCCCTTGTCCATCTTTAGTACAAAATACCGTGGAATACGAGGCACCTTTAATACAAGGACAGTGTCCAGCCAACAATAATGTAGCTTGTACAAAACCTATGTATGTGTAAAAGCCATATTGAGCTATTCATACCTCCAGTCCACAGAGGGCAATGTGCTCCATGACTCCTGCAGGCGGGTGCAATGCAGACACTAGATAGACTCTGGTGGGTTGgtgaacattttaatgcatcccaGCCAATTGCTTAATCTGACTGCCAGTATTTAAACCAGGTGCATTTGCTATCAACATTTTTTACAGATTCCTTAAATTGCTTTTTATAACCATAAATATCAGACTATATCAAGAATTTCTCTCTGAGAAGTGGCCAGACATTACTAAATACAATGTTGATAGGCTGGAAAGCCGGTTTCTTTAAAGGTAGCTCATTAATTGTGTAGCTGGCTCTGGAAGTGGTAGACAGGAGTCAAAAAGTCATGTCTGGACGCCTggacttttttttgtccagaAACAAATTGCACTGATCAGAGACACTGGGACTGTGCCTAAGAGGTGCCTAGAGAAGCTGAAACCAATCAGCCTCTTAAAAGATGCTTCAAACAGGTTTTAAACATCCCTCTGTTCCTCTACCCCATCTGTCCTGCACAGGAGATTAtttgctgtgaaaaaaaaaaacatgaagagACATTTTCTTACATTGTCTAGTTTACGCTGTTATGTTAAAGCTGtgttaatatgtttttgtatttttaaaggaacagttcaccaaaaataaattctggTATTGACctaccctcatgtcattccaaacccaaaTAAGTGATCAACAGATCAAAAAACAACTACTTTAGAAAGAATGCCACATGAGTTTGGGAAGATTTTAGGGcgtgtaaattaaatcaaaattttaatatttgcgtgaacttttcctttttggttttttagcTGTCGTATTTGTTTTGACTTGTAAACATGAGACTGTAGCAAACATTCTTTCTCCTCTCACTTGAGTGCAACAagttaaaatgcttttacttctaaataacaaacaaactcaCTTTAAAAGAGCGAAGTCTTCATCCTGCGTCTGACAAAGAAACACTTTGCTAGACTATAAACACCCGCGGCCATTTTTGACCTCAAATTCCACACATTAACAAACACATTAGTACTATATAAGGATATGGATAACAAACGCTTTtaacaaagctgtttttttacgTGTCAGCTTTCTAAAAATGTCTTGTACTCATGCTTCACGGGCCCCAAACACAGACAAACCAGGGGAAGTCTTTAAAGccagttttctttttgtattcgTTGCCAAGCTGAATGCAGATGGCTGTGCTCATTTGTTTCAACCAGACTATGAACACTAACAAAATACTATGGTACAGTGATGGTATCGGGCGCTAATAGCATATTTAAGGTAATGAatgatgcaaaaataatataatctaatttgttttctttaggcTTCCCTAAAAAGTAAGAGTTTACTTCAGAAAAGAATATAACAAGACCCATGCACAACGAGACTGAAACATTTTCTCTGTGAAAGTGCGAATGCGTTTAAGCCAAAAGTGTCAATGTGGAATCGCATGTTTATGAGCATTATCAGCGCAGCAAAGTTGTGTTAAGAGAAATGGAGCCAGTAATCTAATCTAAAGTGAGGAAAGGTCAATTGTCAAATTCTCCCCACTCTCAGCAGCCTCTTTTTTAGCCCTGCACCACATATCTGTGACCGCATGCAGTACGTTCGCTGAAGATGTCAGCGTCTCTCGCACATCTAAACGTTTGAACTGGAAAGAGGAACAGCTTTACACAGCATGAGGggcttcaaatatttgaaacacTTTCAAAACCGCTTTCAAGTCCCATGCTTACTTTGGGATGCttgttgtttctctcttttgtcgTGCACAAAGCCAagtcttctctctttttttggatGTAAAAATGTGTACTCCTTGGAAGAAAAAATGTGACATCtgttgagaaaataaaatggaaaaacca

Function

symbol description
vasna Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; diencephalon; germ ring; optic vesicle; and prechordal plate. Orthologous to human VASN (vasorin).

NR:

description
PREDICTED: vasorin-like

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223457.1 True 4489 mRNA 0.44 2 12485205 12503977

Neighbor

gene id symbol gene type direction distance location
LOC122328225 LOC107716435,LOC107659297,LOC107569129,LOC107715742 coding upstream 6270 12473253 ~ 12478935 (+)
LOC122327840 NA coding upstream 13870 12469118 ~ 12471335 (+)
LOC122327055 LOC107569129,LOC107655331,LOC107715742,LOC107659297,LOC107716435 coding upstream 60503 12421681 ~ 12424702 (+)
LOC122327054 LOC107715704 coding upstream 63548 12414582 ~ 12421657 (+)
LOC122328076 LOC107659298,LOC107716432,LOC107570368,LOC107575070 coding upstream 73364 12408361 ~ 12411841 (+)
dnaja3b dnaja3b,LOC107716437,LOC107659308,LOC107655350,LOC107715716,LOC554962,LOC107569120 coding downstream 32120 12536097 ~ 12542684 (+)
LOC122327087 LOC107659305,LOC107722666,LOC107755331,LOC107655385,LOC107569131,LOC101886628 coding downstream 141204 12645181 ~ 12650074 (+)
mrps28 LOC107659331 coding downstream 154087 12658064 ~ 12658715 (+)
LOC122327869 LOC107755343,LOC107655376 coding downstream 184947 12688924 ~ 12699036 (+)
LOC122327868 capn8,LOC107755343,LOC107566058,LOC107655376,LOC107655329,LOC107571859 coding downstream 209318 12713295 ~ 12722332 (+)
G152068 NA non-coding upstream 58233 12426756 ~ 12426972 (+)
G152028 NA non-coding upstream 153360 12306554 ~ 12331845 (+)
G151983 NA non-coding upstream 231919 12252841 ~ 12253286 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding upstream 245761 12239108 ~ 12239444 (+)
G152015 LOC107570371,LOC107664873 non-coding upstream 268359 12216447 ~ 12216846 (+)
G152095 NA non-coding downstream 75305 12579282 ~ 12617819 (+)
G152092 NA non-coding downstream 76862 12580839 ~ 12620676 (+)
G152101 NA non-coding downstream 85936 12589913 ~ 12629300 (+)
G152083 NA non-coding downstream 100111 12604088 ~ 12655074 (+)
G152115 NA non-coding downstream 138080 12642057 ~ 12642495 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 61283 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 139455 12345206 ~ 12345750 (+)
G152032 NA other upstream 190488 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 208597 12010469 ~ 12276608 (+)
LOC122327156 NA other downstream 563437 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 603529 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 672450 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 879176 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 900865 13404842 ~ 13509252 (+)

Expression


Co-expression Network