LOC122327836


Basic Information

Item Value
gene id LOC122327836
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11845866 ~ 11855677 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223483.1
GCTTGTGCACAGAGAGGTCTGTTGTAAGAAAGATTTCTTTTTGACAAGCAGGAAAGAGTTTTAGTGACAGATCAAAACAGGTGCTTGTGAACTGAACTCATAATGAGAGTTACTGTAAAACTCCTCGGATTTGGTTTTTGGTTGCTTTACTTCGATTTTGCGTGCTGTCAAGAATGTCGTCGAGATGACATTAAATTTACTAACACGGAATCGGTTGCAAAAGCTTCATACGCTGATGGCGAAACAATGAAAGTGAACTGCATTACGGGTTTTACTGGCTTGTATAAGTTAAAGTGTGAAAAAGGAGAATGGAAGAAATCCATTCAACGACCATGTGCAAAGAGAAAATGCGGTCACCCAGGCGACCTACAACACGGTGATTTTAAACGTGGAGGGACGGAGTTTGTTTTTGGAGCAACGGTGGCTTATTCTTGCCAGAAAGGGTATGAAATGACGAGCAGAATCAATCAACGTACCTGCAGAGCTCAAGGATGGGACAATGCTGTTCCCATCTGTGAGGTGGTAAAATGTCCAGCCGTTTACACCGACAAGGATATAACTGCGTCGGGGGACACAGAGGAGGGAAGTTACGGTGATATTATTCACTTTGAGTGTGCATCTCCTGATAAAATGCTAAATGGAAGTAGTGAAATTCACTGTGAAGAGACTGGAGAATGGAGTGACGTTATTCCAAAGTGCATAGAAATAACTTGCACAGCCCCTGTCATATCACATGGAAAGGTTGTTGAGCCACGTCCGAAATACCTGAAAAATtccatattaaaatacaaatgcgATCCAGGGTTCAAGGCCAAAGAGGGAATCCCAAGATGCGCTAAATCTGGCTGGACTGTGAGCCCAGAATGCGATGAAATAACTTGTGAGCTGAAGTCAACTTCATTTGGAGTGCAAAAGACCAACCCGAAGGGAAAAACTATTTTCAGAGCCGGAGAAAGTGTGGAAATCACCTGCTCTGAAGAATACTTTATCTTTGGTACAAAAGAAGCCAGCAGATCTTTTACATGTCGATATAATGGCCAGTGGGACAATAAGCCTGCTTGTGAAGAGATTACATGTGAAGATCCACGCGACTGGCGTGTGTCTAAACCATACTACTGGCAAATTAAGAAATTTGGAGAAAAACAGTCTTACCGTTGTGAGTCTAGATATCGTGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGAAACCAAAACCACTGTGTGCTGATATTACATGCACAGCTCCTGTCATATCAAATGGAAATGTTGTTGAGCCACGGCCAGAATACCACAAAGATGccatattaaaatacagatgTGATTCAGGGTTCAAGGCCAGAGAGGGAACCCCTACATGTGCTAAATTCGGCTGGACTCTGGACCCAGAATGTAATGAAATAACTTGTGAGCTGAAGTCAACTTCATCTGGAGTGCAAAAGACCAACCCGAAGGGAAAAACTATTTTCAGAGCCGGAGAAAGTGTGGAAATCACCTGCTCTGAAGAATACTTTATCTTTGGTACAAAAGAAGCCAGCAGATCTTTTAAATGTCTACATAATGGCCAGTGGGACAATAAGCCTGCTTGTGAAGAAGTAACCTGCAAGCTGAAGTCGACCATTGATGGAGTGCAAAAGACCAATCCGCAGGGAAAAACTTTTTTCAGAGTTGGAGAAAGTGTGGAGATCACATGCTCTGAAATAtacttgttctttttttcaacCAAATCCAGAAAACACTTTACATGCCAGTATAATGGGGAGTGGGACTTTGAGCCAGTTTGTGAAGaaaccACATGTGAAGATCCACGTGACCAGCATGTGTGGAGACCAAACTGGGGAAATTTGAAATTGGGAGCAAAAAAATTTTACTCTTGTGAGTCTGGATACCGTGAAACAGCAGAAGAGGCCACATGTACAGAGAGGACGGATGGACACCAAACCCACTGTGTGCTGAAATAACCTGTGAGTTGAAGTCAACCGCAGTTGGAGTGCAAAAGATCAAACCTCCGGGAAAAACTGTTTTCAGACCTAGAGAAAGTGTGAAGATCACTTGCTCTGAAAATTACTGGCTATCTGGTACAGACGAATCCAGCAATTCATTTACATGCAATGACAACGGAAAGTGGGATCATGAACCTATTTGTGAAGTTTCAGAGATCAGATGTAAAGAGCCACATGACCAGCATGTGTCTGGACCAACCTGGGAAAATCTGAAACTGGGAGCAAAAAGATCTTACCGATGTGAGTCTGGATACCATGAAACAGCAGAAGAGGCCACATGTACAGAAGACGGATGGACACCAAATCCACTGTGTGCTGGTTCAGCAAAATGTGGGCCTCCACCACACATAAATGATACACATGCAaaagacataataaaaaatgaatacaatacaGGAGAGAGAGTTGAATACACCTGTTCACTTCAATACACATTGGATCCGCATTTTTTCAATTACTTGACCTGTGAAAAAGGACAGTGGAAAGGGACTATAATGTGCTTAAAGCCCTGTATAGTGACGGTGGAGGAAATGGATAAAAGAGGTATAAGGCTGAAATGGAAGAAAAACGAAAATATAACCTCAACACACAATGAAAGCATTGCATTTGAATGTCAGGATGGCAAAATGACAAGCGATAAACTAAGACAAAAGTGTGATGATGGAATGATGACTTTACCTAAGTGTGTGTGACAGTGGAAGTAAAACAGTGAAGCATCAGCTACTAAGCAAACGCTGGAgcaaatcaaaatacattttcccaTTTCAGTAACTCTGTTTTGGATTCCTTATAAgtaaaactaactaaataaataagataaaactgaatttttttgctttatgcTTAAGGAAACACAACGAATTAGTATtgtatgacaaaaaaataaacaacatttaaatcaacagaagaaaaacatacatatctGTACATTAATGTACATAAATGTGAAAAGCCATGCCAAGCAAGGGGAATATTACATAAGCCCTACTATTCAGCTGGTCGATTTTGTAAAGTTGCTCCTTGCACTCTGCAATTAAAAACGCAAAACACCTCAACCGACCATCTTTTAGCCTTAAAATAGTACTATCAGGAATCTCTTAATATGTGCAGTGAAGAATTAACCCTTGAAccattgaatatgcatttttaggAGAAGCCCTCCGAGATGGATTGAAACCAGATCAAGTGTAAATGCATCTGGTTGTTAAAACCACATATAAAAATTTGATTCCtcccaaaatgttaaaataatattgagTTGAAGATTGaatttatgactgtttttgtgcGCGCGCCTGTGTTGAAATGGAACCGTTTTAACAAATAGATAAAGTGACCAGGTGTAAACAGGCCCTTAGATTGAGTTTCAGATCAGTTTAGGGGTTTTGCATGTCTTTTTAATCAATCACACCCGATTCAAATCATCAGCTCATCAGTAGACATTATCTGGTTTTGTACATAGCTCCTCACATCTGAGATGATTTCTAATCCTGATAACTGATGTCTGGCTAATTTggtttttcaaatgcatttgtgtatttgaCTAAAATATCTGGATTTAAGATGACTGCGCTTTcctgagtttttttttgtgaagggcTTACATGTAGCAGGtatctgaaaataaacacaaacattcgTGGTCAgaattattggcacccttggtaaatatgactGTATCATTGGAATGAGCATTGGAAgcttgtgaaaataaatctgcatcaTTAACAGTTGTCCTGATTAAACATCCATGACCCATTA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223483.1 True 3768 mRNA 0.40 17 11845866 11855677

Neighbor

gene id symbol gene type direction distance location
LOC122327288 capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344 coding downstream 30288 11804815 ~ 11815578 (-)
LOC122327734 celf5a,celf5,LOC107675909 coding downstream 195044 10467127 ~ 11650822 (-)
LOC122327726 LOC107719667,LOC107699403,LOC107593325,LOC107676991,LOC107717979,LOC107586464,LOC100332608,LOC108270593 coding downstream 274188 11567017 ~ 11571678 (-)
tle5 aes,LOC107586404,LOC107593322,LOC107699415,LOC108430095,LOC108271216 coding downstream 380791 11440216 ~ 11465075 (-)
tle2b si:dkey-42p8.3,LOC107719559,LOC107676970,LOC107699414,LOC108271164,LOC108430094 coding downstream 419785 11382193 ~ 11426081 (-)
LOC122327835 NA coding upstream 7118 11862795 ~ 11870285 (-)
rgs2 LOC107741538,LOC107564933,LOC107664962,LOC107560697,LOC107735525 coding upstream 174785 12030462 ~ 12032362 (-)
si:ch211-117l17.5 LOC107655356,LOC107715708,LOC107741540,LOC107564934,LOC107664973 coding upstream 184599 12040276 ~ 12043067 (-)
LOC122327260 LOC107664925,LOC107741564,LOC107655340,LOC107715693,LOC107564927,LOC107560680 coding upstream 195002 12050679 ~ 12053495 (-)
uts2d NA coding upstream 198594 12054271 ~ 12055396 (-)
G151919 NA non-coding downstream 255943 11587661 ~ 11589923 (-)
G151904 NA non-coding downstream 294996 11550198 ~ 11550870 (-)
G151896 NA non-coding downstream 315256 11528098 ~ 11530610 (-)
G151893 NA non-coding downstream 322444 11522030 ~ 11523422 (-)
G151889 NA non-coding downstream 327725 11509400 ~ 11518141 (-)
G152223 NA non-coding upstream 137036 11992713 ~ 11993033 (-)
LOC122327268 NA non-coding upstream 137446 11993123 ~ 11997045 (-)
G152234 NA non-coding upstream 170435 12026112 ~ 12026795 (-)
LOC122327264 NA non-coding upstream 221064 12076741 ~ 12080117 (-)
LOC122327175 NA non-coding upstream 227830 12083507 ~ 12086914 (-)
LOC122327182 NA other downstream 724 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 41168 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 355212 11465852 ~ 11490654 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other downstream 614617 11229974 ~ 11231249 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other downstream 657174 11174143 ~ 11188692 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other upstream 189792 12045469 ~ 12049538 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other upstream 287165 12142842 ~ 12145575 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 502006 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 705166 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 1050456 12906133 ~ 12914243 (-)

Expression


Co-expression Network