crygs1 (crygs1,LOC107756035,LOC107586953,LOC107663530)


Basic Information

Item Value
gene id crygs1
gene name crygs1,LOC107756035,LOC107586953,LOC107663530
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6318996 ~ 6322086 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223487.1
CTCATTAAACTAAGAAggcaagcattttttttcttctaatgtGCACAACCCCAGCTATGATGTTCTTAtgttcaagaaatctttaaatgTGTAAACCTCAATACTTCAGGTTTAGCAAGATGCTAATGCAAACAGTCTGTGGCAAACTCTGGTAGCAAGATGCACCCTTCTCACTATTTCTTGCTAAATACTTTTACCGGCAAATTAGAGAGTGGCAGTAACTTAACTGGTGTCTATAGCCTATAATGCTGTATCCCCATGGTTAAAATTAGGCTATGGAGTTCATATGTGGGTAACTGTTACAGGAAGACcgttatttaaattataagtTAAATCGCGAGCTCTGAAGCACTTACTTGAGAAACAGCTGTAGAAAGCAGACCCAGATATCCTAATAAACTTGTCATCATAacttaacaaaaacattctttcCACTCTTCAAATAAAGggtaatgtttaaaacatagcattttgcattttctgaGGTAAATGTGAGCGATGCTACCGCTAAAGTCTTATGAAGAAAAGATGAACGCTGCTCCCTAGTGGTCGCTTCGGGTTTCCCTCCTTTTTGTGAAGTATTGAATACTTTTGGCATGAACAAATTTGATGAAGAAATTAGCTATGTTGGTACTATTAGCATCCGTCATGCTGGCATTGTTGACTTATAATGTGCTTTATGTATTTTACCGCAgtgttattttgtattgccTACTTTTGAAATGTCATTAGCTTTcagctattttgtatttttcctcAGGCATTATGGGATAGCAAAGTGTTGGACACTTTCCTGTAACTTGCTATCTAGCATTTAGCTCAAAATGCTAGATAGAATGTTTTTCATtcaagtgctgttttttttagctatCTGGCTTTATGCATAGTTATAGTTAACTACACAAGTTAGagcttttatttacaaaatgtgctAGCTGTAGTAACCTTTTTTGTTTACCGTAAAGTATATGTATTTCTATACATGAGTACATTATGCacataattaagaaaaatgaacTCTTTGTGCGTTTTTTGGGTGGAAGTAGGTCACGCTGAACCCATATAAGCTCATCTGATCCCTAAAATTTGGCAGAGATTTTTGCTTGCAGCCGGGAATGGCATTTCTGTGTGTATCTGAGcgtgtttgtttgcatatttgcagatgtttgtgtgtgttaatgctACAGGCCATTGTGTAGCATGGAATTTTAATACTTTGCATACAGGAAGTTGATTTTCCACTTTTCTGGACCAATAATTTTTAATACGAGCGCTTGTGGAGGTGTGTGCGTACCTACCAACACAGCTGAATAAACACACATCCAAACAGGCCCATGCGCTCAGTGCCGTCTCTATACCCCATAATCCACCTGTCTTTTTCTAGAAAGCACTGACTCAATTTTTGGATCTGGTTTTCATGACAAAGCGAATGTCCTCTTTACAGAGAGATGTCTGGGTATAAAAGAGCCAGAGTGGGACGGGCCTGAACCAGCACAGCTCCGCAGCTCTACCCCCTCCACAGGCGCCGCCACCAGCCGAACCTCAGCAGAATGGGCCGGATAATTTTCTACGAGGACAAGAACTTCCAGGGCCGTCGGTACGAGTGCGACAGCGACTGTTCGGACTTCCATGCCTACCTGAACCGGTGTAACTCCATCCGTGTGGAGAGCGGGGCCTGGGTGGTCTACGAGAGGCCCAACTTCATGGGCTACCAGTATGTTCTGACCCGGGGCGAGTATCCGGATTACCAGCGCTGGATGGGTCTGAACGACCGCCTCTGCTCCTGCAAGATGATCCACTTCGTGAGCGGTTCTGAGTACAAGATCCAGCTCTATGACAAAGGAGATTTCGCGGGCCAGGTGTACGAGACCACCGAGGATTGTCCATCCATGGTGGAGCGCTTTCGGACACGCGAGGTCCACTCCTGTAAGGTGCTAGACGGGATCTGGATCTTCTACGAGCACCCAAACTAGGGGCGCCAGTACCTACTGGAGAAGGGGGAATACCGTAAACCCGTGGAATGGGGCGCCGTCTGCCCCACGGTTCAATCCTTCAAACGCCTGACGGAGTGACGTCTGAACTGGAAATCCATCCATCTGCAGTGTTCCCTTGCCTCCAAACCACCCAACCATGACAGCACCGACACACCTGTGCCGAATCAA

Function

symbol description
crygs1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract 20 multiple types. Orthologous to human CRYGS (crystallin gamma S).

NR:

description
PREDICTED: beta-crystallin S isoform X4

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223487.1 True 2162 mRNA 0.44 4 6318996 6322086

Neighbor

gene id symbol gene type direction distance location
mettl21a mettl21a,LOC107663696,LOC107704411,LOC108415896 coding downstream 10685 6306421 ~ 6308311 (-)
dpp4 dpp4,LOC107663703,LOC107586951,LOC107755996,LOC107593097,LOC107745999,LOC107704406 coding downstream 17493 6286427 ~ 6301503 (-)
pcyt2 pcyt2,LOC107745976,LOC107756034,LOC107704410,LOC107593040,LOC107586950,LOC103356210,LOC105905797 coding downstream 36867 6272453 ~ 6282129 (-)
gnav1 gnav1,LOC107756032,LOC107745977,LOC107663576,LOC107586948,LOC107704417,LOC107593084,LOC106591843,LOC108259514 coding downstream 47639 6238357 ~ 6271357 (-)
slc26a11 slc26a11,LOC107663565,LOC107756030,LOC107745975,LOC107593041,LOC107704413,LOC107586945 coding downstream 87822 6221862 ~ 6231174 (-)
krt222 krt222,LOC107586952,LOC107663524,LOC107745982,LOC107653582,LOC107755987,LOC107593079 coding upstream 347 6322433 ~ 6335997 (-)
ptpn4b ptpn4b,LOC107586954,LOC107653584,LOC107593078 coding upstream 25565 6347651 ~ 6375093 (-)
pth2rb LOC107739359,LOC107587008,LOC107663669,LOC107653586,LOC107746000,LOC107593036 coding upstream 72497 6394583 ~ 6414114 (-)
tmem163b tmem163b,tmem163,LOC107739337,LOC107586956,LOC107663488,LOC107745987,LOC107653588,LOC105909211,LOC103367750,LOC107381042 coding upstream 151695 6473781 ~ 6501308 (-)
zranb3 zranb3,LOC107687885,LOC107663643,LOC107710929 coding upstream 202700 6524786 ~ 6578427 (-)
LOC122327580 NA non-coding downstream 4769 6313175 ~ 6314227 (-)
G150273 NA non-coding downstream 135095 6157497 ~ 6183901 (-)
G150271 NA non-coding downstream 163980 6144878 ~ 6155016 (-)
G150234 tmprss9,LOC107704409,LOC107731339,LOC107593090,LOC107695615,LOC107586983 non-coding downstream 463829 5854785 ~ 5855167 (-)
G150233 NA non-coding downstream 464593 5854201 ~ 5854403 (-)
G150216 krt97,krt96,LOC107663680,LOC107745983,LOC107593038,LOC107739339,LOC107580444 non-coding upstream 22053 6344139 ~ 6345150 (-)
G150322 NA non-coding upstream 55601 6377687 ~ 6381972 (-)
G150325 NA non-coding upstream 62070 6384156 ~ 6386767 (-)
G150453 NA non-coding upstream 275818 6597904 ~ 6599533 (-)
G150442 NA non-coding upstream 280969 6603055 ~ 6606554 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other downstream 33416 6282456 ~ 6285580 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other downstream 82131 6236252 ~ 6236865 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other downstream 326238 5989497 ~ 5992758 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other downstream 457664 5859347 ~ 5861332 (-)
LOC122327537 NA other downstream 555014 5758006 ~ 5763982 (-)
G150440 r3hdm1,LOC107739334 other upstream 193479 6515565 ~ 6659352 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other upstream 392708 6714794 ~ 6728690 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other upstream 500117 6822203 ~ 6939000 (-)
nab1a nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950 other upstream 524804 6846890 ~ 6889657 (-)
mfsd6a mfsd6a,LOC107687869,LOC107739325,LOC107600976,LOC107653600,LOC107754251,LOC105022531 other upstream 543137 6865223 ~ 6873200 (-)

Expression


Co-expression Network