glis2a (glis2a,LOC107755347,LOC107566676,LOC107659323,LOC107742086,LOC107566055)


Basic Information

Item Value
gene id glis2a
gene name glis2a,LOC107755347,LOC107566676,LOC107659323,LOC107742086,LOC107566055
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12756711 ~ 12771161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223497.1
gcgcacaTCTGGAGGAAAATAAAGAATCATCATTTCATGTCCTCCACCCTCTGTCTTATTCTCCTCCCTCTCCCTCCGTCTCTTTTTCTGACTGAGGAAGGAGCCGGGAGACAGTAGACAGGCGTCGTAAGCAAACGATGCTcctttgaaatgtatttattttaaaacgatTTATCGCAACTTGACACGATTCCGCGTTTCCCGACCATTTGCCCTAACGGCAACAGTTCGCGTCTCAGTCCGAGTATAGCCCGTCGTGTTAGACGCGAGTTGGAAACGCTCGGCCGGATCCAGGGGTGTTTTTGATGAAGACATCTGGCGTTTTGACCGCTGAGCGTTGAACGGACCGCGCTCCACAAGCCGTCGCGTATCTCGGAACCAGACGGAGCGTCTTCGCTGAGGCTGGTGGATCAAAGCCATGCTGTCGCTGGACGAGCCCCTGGACCTGAAGCTTCCCTCTGGCCGCGACAGGATGCTCAGAACGTCCATCTGTGCCCCGCTGCACTTTTCTCGTGCTCGAATATCACGCGCATTGCACAAGGCCAAAAGCCCTGATGCAGCTGACAAGGACATGTCAGATTCTTCATCGTCCACGGTGGTAGATCTGAGTCTGTCTCCATCTTCCTCTCCCTCACCACCCTCTCCTATAGACAGTGGCGCTAGCTGGAGCCCCACAGCGCCTCACCTGGCCTCCGAATCCGAAAGCACCATGTACCATGAGGACAGCGCCTCACCTCCTCCGGGTTTCCAGTTCTTTCTGCCCATTGGTGCAGAGGGTCCCCTGCGCCTGCCCTCCTCgatgctgattggtcagcaCTCCCCTGAGCCCTCGAGTGACGAACAGCTGGCCTGCCGCTGGCTaaaaTGCCACCTGCTGTTCGAGAGCCTGCAGGATCTGGTGGACCATGTGAATGACTCGCATGTGAAACCAGAGAAGAATTCGGGATACTGCTGCCACTGGGAAGGCTGCGCGCGCAAGGGCAGAGGCTTTAATGCCAGGTACAAGATGCTGATTCACATCCGTACTCATACCAACGAGAAACCTCATCACTGCCCTACCTGCCACAAGAGTTTCTCACGCCTGGAGAACCTGAAAATACACACCCGCTCACACACAGGAGAGAAGCCGTACATCTGCCCTTACGAAGGCTGCAACAAGCGCTACTCGAACTCCAGCGACCGCTTCAAACACACTCGCACGCACTACGTAGATAAACCCTACTGCTGCAAAATGGTGGGCTGTCTGAAGCGCTACACCGACCCCAGTTCTCTCCGCAAACACATCAAGGCCCACGGACACGCCGTAGTGCAGGACCGCACCGCCTCGCCCAGAACCAACAGGCTGGAATCAGATGGTGCCTCATCGATGAATGGCCGACGGATGGACCGTTCTTACCCAGGAGCGGCTCGTTTTGTCTTTCCGGGTGCGGCGACAACCTTGTTTGGGGCTCACGCCTTCGCCGGCCTTAGCAATCACCCCCTGGATCTGTCTAGGCTCAGTCCGCTTTTAGGAGCCGGGCCGGCGCTGTACCCCAGCTCTGGGGCTCTTGGGCTTGGGAAGGTGCCTATCCTGCACCCCTTGTTGTTGCCGCCATTCGGTCTCGGCGTGGGTCAAGCTGAAAGAGCGGTTGAGGAAGAAGAGGATgttgatgatgaagatgaaggcaGGATGGGAGCAGGACGAGGCCCTCACTCGTGGGTCGTGATTCCTCCGGGCATGCTGTTCTTGAAACAAGTGGCGACCACGTAAAGAGACTCGTGGGTCTTGTTCACACTGCACACCGATCTGATTTCAAATCGGATTAAGGTGTCATTTTGCGAGATCGGTCCCCAAAAAACTACTTTGAAAAAGAACCGTTAATCTGATTTTTAACTGTTCACGAATTAGGTGTGAATCCAGTTTATTTGCGTTCACACTAGAGGAGCTCAACTGCTTTTAGTCAGATATGCCAAAAATTATTCTAAACAAGGCTTTATGGACCATTCTCAGCAATTACAATaactataaagttttaaatgaatgaaataatatagTAGGAATAACTTTCAGAATGATCCAGCCAATTAGGATCCACCTGAGTTTCCAGCACTTAAAGCAACAAAACTAGAGCGTTTGAATACAACGAACAGAACATTACTGTCCATTTACGTGAATGCTAATATAGTTATTGTCCCTCGTGTGAACAGGCATTTAGCCactcatttttgcattttaatttgacaaGGAATTGAAAATGTTCGTTTTGGAGGTGCTGGCTTGAAGGGTAATCACCTGTAAGTTaattcaaatattgatttttttcattacttcCTGCACCATCTGTACACAATATTAATTAGCAAATCGTCAAAGACATCAGAGCGTCATGTGATGTTGATAAGAAATTGTTAGAAATTAGCACTTTGTAAGTATTAGTACGCACCTTGATTTATCTGAATGAGCCTCAGACTATTGACAGTGACCAAACAGAGAACAGGATGTGACATGGAAAGCATACATAAGACATACATCTTCAGAATTATGCTAAAAAGCACCTGCTGTGAGCTAACAAAGAAACTTAAGCCCACGTTCCCCAACAATAGCCCGGATATggtcatttgttaaaaaaaaaaacagcttttaaatgcTGCGAGTGAATTTAGGCATCGCTGATTACTTTTAGAGtaaaagattaattttaaaagtgttattttgtttttaattttaatttgctaaTGTTAAATTAACGTCAGATGAGCGTTAGAAGGCAAAGATCAatctaaatgataaaaataggTTAAAATGAGCatgtgcaattaattttttttttttaatattgattatttgaaataaatggtCCATATTGCATCTATAAAACCAGCTAGAAAACATGTGGGTCTTGTTTGCAAATTTTGATTAACGGTGATTCGTAAAGCCAAGAAGTAACCGAGTCGTGACACGCagctgcattttaataataatttagcaaatGAAGCGAAGATGTGCACCCTGACTGCCATGAGTAACCATCagcttgtgttttcattattagCCATTTAATGGTGCCGCTTTACGTTTTGTATGTGTTCTCCGACGAGACACCGACTGTGTCAAAACCGTGAAAAATCCACTATTCGTAATCCGTTTTTAGTTCTGTGGCTAGCAGATTGGTAAACCTTTATGCATGGCTGACCTTTCttattaaaagtgtaaaaacctGAGCCCGGTTTTGCACGAGAACCGCATATGTAATGTTATATAGCTCTGATCTGATATCTGCCATGCATAATGGATAAATGCTAAGACTATGGCCTGTCACGGTCAGCTTGAGTATTGTAATGAACTATATTTGCACAGGATATTTTACCGAATTTTTACCAATACCAAGTGCCTTATAGTGTAAGGTCGTCATTGACGAAATACAATGTATGAAATACATTTGGATGTATATTGTCAgttcatgtatgtatattttaccAGATTTAGTTCAATAGGTTTCTAtcgtaaatgtttgtttttacatgttttgttttttttgacgtTGAGGCTACAGCCTCATGAAGTTGAACTAATGCTAATGTGTCTTACCATACCACAGGACGTCTGTCAACGTGACCGGAATTAAATTCATGAAATAGAGGACTGTGATGCATAAGTCCAATAAAGAGTGCAATGACTAAA

Function

symbol description
glis2a Predicted to enable metal ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Is expressed in eye; gut; heart; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in nephronophthisis 7. Orthologous to human GLIS2 (GLIS family zinc finger 2).

NR:

description
PREDICTED: zinc finger protein GLIS2-like

GO: NA

KEGG:

id description
K09233 GLIS2; zinc finger protein GLIS2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223497.1 True 3661 mRNA 0.45 8 12756711 12771161

Neighbor

gene id symbol gene type direction distance location
b3galt10.1 LOC107755334,LOC107659303,LOC107565179 coding downstream 232 12753797 ~ 12756479 (-)
LOC122327893 LOC107755333,LOC107659309,LOC107565190,LOC107655328,LOC107742102,LOC107566033 coding downstream 5249 12750258 ~ 12751462 (-)
b3galt11 LOC107755332,LOC107565188,LOC107659304,LOC107742103,LOC107655348,LOC107566034 coding downstream 9823 12738723 ~ 12746888 (-)
capn2b capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344 coding downstream 75147 12670807 ~ 12681564 (-)
capn1b LOC107755342,LOC107655377,LOC107565170,LOC107659327,LOC107722661 coding downstream 86017 12659174 ~ 12670694 (-)
mcrip2 si:dkey-44g23.5,mcrip2,LOC107755353,LOC107742098,LOC107566049,LOC107655365,LOC107659318,LOC107566669 coding upstream 91668 12862829 ~ 12867566 (-)
gde1 gde1,LOC107655362,LOC107755351,LOC107742094,LOC107566664 coding upstream 96535 12867696 ~ 12873030 (-)
hmox2a hmox2a,LOC107659301,LOC107742095,LOC107566667,LOC108440694 coding upstream 105653 12876814 ~ 12883196 (-)
xpnpep1 xpnpep1,LOC107659312,LOC107755355,LOC107655345 coding upstream 185295 12956456 ~ 12966143 (-)
cusr LOC107755356,LOC107659311,LOC107566031,LOC107566661,LOC107575609 coding upstream 197840 12969001 ~ 12977687 (-)
G152386 NA non-coding downstream 8271 12748222 ~ 12748440 (-)
G152363 NA non-coding downstream 73326 12683090 ~ 12683385 (-)
G152351 NA non-coding downstream 211584 12544901 ~ 12545127 (-)
G152341 LOC107659297,LOC107716435,LOC107569129,LOC107715742 non-coding downstream 277259 12474768 ~ 12479452 (-)
G152340 NA non-coding downstream 321755 12434581 ~ 12434956 (-)
LOC122327774 NA non-coding upstream 173133 12944294 ~ 12953144 (-)
G152454 NA non-coding upstream 231212 13002373 ~ 13002884 (-)
G152463 NA non-coding upstream 266218 13037379 ~ 13037599 (-)
G152466 NA non-coding upstream 283834 13054995 ~ 13055260 (-)
G152468 NA non-coding upstream 285157 13056318 ~ 13056558 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 187984 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 393316 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 611136 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 707173 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 911569 11841588 ~ 11845142 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 134972 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 426873 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 608528 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 806640 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 1054208 13825369 ~ 13829699 (-)

Expression


Co-expression Network