uchl5 (uchl5,LOC107664699,LOC107655412)


Basic Information

Item Value
gene id uchl5
gene name uchl5,LOC107664699,LOC107655412
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12022117 ~ 12026752 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223499.1
GAAGAATGACGCGCGTCGAAAGGAATGCCGGGAAACCCGCCGTATGCGTGAATGAGTCCCATTAGCCTCGTCTAACCGCTACTCGAGCGCAGCTTTCCGTTTACGATAAGAAACATAATTACAGAAATGGCGGGAAGCGCTGGCGAATGGTGTCTTATGGAAAGCGACCCTGGAGTTTTCACGGAGCTGATAAAGGGCTTTGGATGCAAAGGCGCGCAGGTAGAAGAGATATGGAGCATGGAGCCCGAAAACTTTGAAAATCTCAAGCCCGTTCACGGTCTGATTTTCCTCTTCAAGTGGCAGCCCGGTGAGGAGCCGGCGGGGTCCATCGTTCAAGACTCCAGGCTGGATCAGATCTTCTTCGCCAAGCAGGTCATCAACAATGCCTGCGCGACCCAAGCGATAGTCAGCGTGTTGTTAAACTGCACGCATCCCGATATGCACCTCGGGGAAACGCTGACAGAATTTAAAGAGTTTTCGCAAAGTTTCGACGCCGCGatGAAGGGCCTTGCTCTCAGCAACTCTGAAGTGATTCGACAAGTTCACAACAGCTTCGCCAGACAACAGATGTTTGAGTTTGACGCCAAGTCGTCGGCTAAAGAAGAAGACGCTTTTCATTTCGTGAGCTACGTTCCCGTTAACGGACGACTTTACGAGTTGGACGGGCTTCGCGAAGGACCCATAGATCTGGGCGCGTGCAACCAGGACGATTGGATCGGTGCTGTGCGGCCCGTCATTGAGAAGAGAATACAGAAATACAGCGAGGGTGAGATTCGGTTCAACCTGATGGCCATCGTTTCAGACCGCAAGATGATTTATGAGAAGAAGATCGTTGAACTGCAGGCTCAGCTCACGGAGGAAGAGCCCATGGACACGGACCAGAGCGGAAATCATCTGAGCTCTATCCAGTCGGAGATCGCCAAGTATCAGCTGCTGATCGACGAAGAGAACCAAAAGCTTAAAAGATACAAAATTGAGAACATTAGAAGGAAGCACAACTACCTCCCCTTTATAATGGAGTTACTGAAGACGCTGGCTGAATATCAGCAGCTGATACCGCTGGTGGAAAAGGCAAAGGAAAAACAAAGTGCCAAAAAAATCCAAGAAGCCAAGTAACCCCTCAACGTTAGACCCGGTTTAATTTTAATGCCACGGAATATCTTGATGTGCACCCGGAAGTCTCGCTATCGTTTCCTTCGCGTCTGTGCATGCATGCGAAGAGATGTTTAAAATCACgtcttattttcatataaatttcATTTGTTCTGTAATGGTGTTGtttgatgcatttttgtttttgttttttctgattAGCGAACGGTAAATTGctgtaaaatactgtacattaaagcACTAATGTATCTTA

Function

symbol description
uchl5 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be part of Ino80 complex. Predicted to be active in cytoplasm. Orthologous to human UCHL5 (ubiquitin C-terminal hydrolase L5).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like isoform X1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K05610 UCHL5, UCH37; ubiquitin carboxyl-terminal hydrolase L5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223499.1 True 1366 mRNA 0.48 11 12022117 12026752

Neighbor

gene id symbol gene type direction distance location
glrx2 glrx2,LOC107664942,LOC107560687 coding upstream 481 12019242 ~ 12021636 (+)
b3galt2 b3galt2,LOC107741544,LOC107715722,LOC107564918,LOC107664691,LOC107560698,LOC107655413 coding upstream 18261 11997220 ~ 12003856 (+)
LOC122328196 mrpl14,LOC107676385 coding upstream 228952 11792550 ~ 11793165 (+)
LOC122327862 NA coding upstream 229659 11787586 ~ 11792458 (+)
LOC122327737 LOC107717980,LOC107676979,LOC107719556,LOC107699417,LOC107586407 coding upstream 486376 11522004 ~ 11535741 (+)
ccdc50a ccdc50,si:ch73-6k16.1,LOC107560694 coding downstream 30068 12056820 ~ 12077871 (+)
LOC122327174 LOC107741537,LOC107564920,LOC107655355,LOC107715710 coding downstream 55669 12082421 ~ 12084561 (+)
p3h2 p3h2,LOC107664742,LOC107564922,LOC107715694 coding downstream 60413 12087165 ~ 12122997 (+)
LOC122327103 NA coding downstream 98741 12125493 ~ 12130315 (+)
wdr47b wdr47b,wdr47,LOC107741541,LOC107664763,LOC107655405,LOC107715726,LOC107560691,LOC107564929 coding downstream 105216 12131968 ~ 12144436 (+)
G151976 NA non-coding upstream 15535 12006268 ~ 12006582 (+)
G151972 NA non-coding upstream 29317 11992590 ~ 11992800 (+)
G151936 NA non-coding upstream 154576 11867082 ~ 11867541 (+)
LOC122327899 NA non-coding upstream 235406 11777483 ~ 11786711 (+)
G151906 NA non-coding upstream 469806 11551893 ~ 11552311 (+)
G151999 NA non-coding downstream 19100 12045852 ~ 12048265 (+)
G152015 LOC107570371,LOC107664873 non-coding downstream 189695 12216447 ~ 12216846 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding downstream 212356 12239108 ~ 12239444 (+)
G151983 NA non-coding downstream 226089 12252841 ~ 12253286 (+)
G152028 NA non-coding downstream 279802 12306554 ~ 12331845 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other upstream 186983 11826565 ~ 11835134 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other upstream 196910 11822934 ~ 11825207 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other upstream 693887 11318107 ~ 11328230 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 1027173 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 1100086 10918089 ~ 10922031 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 148935 12175687 ~ 12189006 (+)
G152032 NA other downstream 266648 12293400 ~ 12294717 (+)
G152043 LOC107741571 other downstream 318454 12345206 ~ 12345750 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other downstream 382554 12409306 ~ 12423922 (+)
LOC122327156 NA other downstream 1040662 13067414 ~ 13098756 (+)

Expression


Co-expression Network