atp5f1d (atp5d,LOC107728581,LOC107719603,LOC107554819,LOC107569937)


Basic Information

Item Value
gene id atp5f1d
gene name atp5d,LOC107728581,LOC107719603,LOC107554819,LOC107569937
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10183038 ~ 10187587 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223518.1
TGACGGGAAAGGTTGTCCATGCCCTTGTCCTATCAGCCGCGCACTATCTGACTGACCGAGTGTCTGTGTGGACGGGGAAGCCGACGCTTGATTATCACCGTGCCGTAACGAGTCGCTTCTCCGTGGTAAAGATGCTGGCTGCGAGGTTTCTCCTCCGTCGCGCGGTCCCCGCACTGAGACACGCGCGTTGTTACGCCGACGCGCCCGCCGCTCAGATGTCCTTCACTTTCGCGTCGCCGACACAGGTGTTCTTcaaggaagccagtgtaaaacAGATTGATGTCCCGACCCTGACAGGCGCCTTTGGTATCCTCCCAGCCCACGTCCCCACGCTGCAGGTGCTCCGGCCCGGCGTAGTCACCATCTTCAGTGACGATGGTTCCTCTGCTAAGTATTTCGTGAGCAGCGGATCAGTCACCGTCAATGCCGACTCTTCGGTGCAGCTGCTGGCGGAGGAGGCCGTTCCTCTGGACAGCCTGGACCTCGCAGTGGCAAAAGCCAACCTCGAGAAAGCCCAGTCGGAACTGGGGGGCGTTTCAGATGAAGCAGCCCGGGCGGAGGTTCTGATCAGCATAGAGGCAAACGAGGCAATCGTCAAAGCATTGGAGTAAACAATGAGTAAATTTGTGTTGGATTTTTTGTCGGTGTGAAAAGGTCTCCGGCTTTGTCTGTTCCTCACCCCAGTGAAGTCAGAAACCACAAGACTTAACTGCTTGCTTTGTACAGTGGaagaaatgaacaataaatttatttgaaataa

Function

symbol description
atp5d Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton transmembrane transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; eye; genitourinary system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta).

NR:

description
ATP synthase subunit delta, mitochondrial-like

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223518.1 True 760 mRNA 0.55 5 10183038 10187587

Neighbor

gene id symbol gene type direction distance location
midn LOC107554818,LOC107728568,LOC107687715,LOC107655225,LOC107719606 coding downstream 9721 10151462 ~ 10173317 (-)
cirbpb LOC107599461,LOC107655227,LOC107719610 coding downstream 102941 10075032 ~ 10080097 (-)
si:ch211-212d10.2 si:ch211-212d10.2,LOC107728577,LOC107687719,LOC106613739,LOC101487565 coding downstream 135164 10044222 ~ 10047874 (-)
tssk6 tssk6,LOC107687737,LOC107728539,LOC107554804,LOC107599475,LOC107719648 coding downstream 188031 9994192 ~ 9995007 (-)
tmem161a tmem161a,LOC107728546,LOC107599454,LOC107719614,LOC107554814,LOC107687722 coding downstream 264122 9913423 ~ 9918916 (-)
LOC122328192 NA coding upstream 206425 10394012 ~ 10396169 (-)
LOC122327734 celf5a,celf5,LOC107675909 coding upstream 279540 10467127 ~ 11650822 (-)
zgc:165603 celf5a,LOC107719642,LOC107655216 coding upstream 439199 10626786 ~ 10650952 (-)
rxfp3.2b rxfp3.2b,LOC107729713,LOC107719591,LOC107675915,LOC107586455,LOC107596869,LOC107655214,LOC108435892 coding upstream 501419 10689006 ~ 10692778 (-)
creb3l3a creb3l3a,LOC107675914,LOC107719590,LOC107729712,LOC107586456,LOC107655213,LOC107596868 coding upstream 508770 10696357 ~ 10702574 (-)
G151439 NA non-coding downstream 110146 10053918 ~ 10072892 (-)
G151444 NA non-coding downstream 154599 10023218 ~ 10028439 (-)
LOC122327858 NA non-coding downstream 317150 9819693 ~ 9865888 (-)
G151319 hapln4,LOC107554801,LOC107728536,LOC107719665,LOC107599484 non-coding downstream 561873 9616790 ~ 9621165 (-)
G151289 NA non-coding downstream 718525 9426153 ~ 9464513 (-)
G151468 LOC107687734,LOC107728578,LOC107719602,LOC107655224,LOC107569929 non-coding upstream 2243 10189830 ~ 10194857 (-)
G151457 NA non-coding upstream 57331 10244918 ~ 10249842 (-)
G151507 NA non-coding upstream 187586 10375173 ~ 10375615 (-)
G151508 NA non-coding upstream 188054 10375641 ~ 10375960 (-)
G151569 NA non-coding upstream 254900 10442487 ~ 10442738 (-)
G151425 NA other downstream 199891 9957811 ~ 9983147 (-)
gpx4a gpx4a,LOC108429535 other downstream 680032 9498669 ~ 9503006 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other downstream 1011107 9013548 ~ 9171931 (-)
G151107 tal1,LOC107669848 other downstream 1296097 8884121 ~ 8886941 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 1570294 8600350 ~ 8612744 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 94435 10282022 ~ 10321663 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other upstream 231540 10419127 ~ 10422354 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other upstream 747465 10935052 ~ 10994952 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other upstream 986556 11174143 ~ 11188692 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other upstream 1042387 11229974 ~ 11231249 (-)

Expression


Co-expression Network