LOC122327868 (capn8,LOC107755343,LOC107566058,LOC107655376,LOC107655329,LOC107571859)


Basic Information

Item Value
gene id LOC122327868
gene name capn8,LOC107755343,LOC107566058,LOC107655376,LOC107655329,LOC107571859
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12713295 ~ 12722332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223524.1
ACCAGCATCGGTCTCATAgaaacacacactacacaagCTTCAGAGGAGCCTGAGTGCGACTACAGGGCAGCATGTCTAATATCGCTAAAGTTCTTTCTAGGAGGCAGGATAGAGGAGAAGGATTGGGAACAAACGAGAATGCGATTCCCTTCAACAAGCAGGACTACCAGACCCTAAAGCAGGAATGCCAGGCGAAAAAAACCCTGTTCTGTGACCCGACCTTCCCTGCTGAATCCGACTCTCTGGGATACAACGAACTCGGGCGGTACTCCTTCAAGACCAGAGGAGTGCAGTGGAAGAGACCTAAGGAGCTCTGCTCAAGCCCTCAGTTCATTGTGGACGGAGCCAAGCGGACGGACATCTGCCAAGGAGCTTTAGGCGACTGTTGGTTGCTGGCAGCTATTGCATCTTTGACTCTGGATAATGCAATTCTGGAACGTGTAGTTCCACCTGGACAGAGTTTTATAGAGGACTACGCCGGCATCTTTCACTTTCAGTTCTGGCAGTTCGGTGAATGGGTGGACGTGGTCATCGATGACCGGCTGCCCACCAGAGATGGAAAGCTGCTGTTTGTTCATTCCGCCGAGGGCTCTGAGTTCTGGAGCGCACTGTTGGAAAAAGCTTATGCAAAGCTTAACGGCTCATATGAAGCTCTGTCTGGAGGTTCGACCACTGAGGGTTTTGAGGATTTCACTGGAGGCATCGCTGAGAACTATGAGCTGAGCAAAGCTCCTCCATACCTGTTTAAACTCATGCAGAAAGCACTGACACTGGGATCATTACTGGGCTGCTCCATTGATATTACCAGTTCCTATGAGACAGAGGCAGTGACGAGTCTGAAGCTGGTGAAGGGTCATGCCTACTCCGTCACGGGTGCAGAGGAGGTTCATTCCAATGGTCGTCTGGTTCAGTTGGTGCGTATCAGGAACCCTTGGGGTCAGGTGGAGTGGACGGGCCCTTGGAGTGACGATTCCAAAGACTGGAACAGCGTCCAACCAGAGGAGAAAGCTAAACTGGATTATTCTGCTGAAGATGGAGAGTTCTGGATGGCATATTCGGACTTCATACAGCAGTTTTCAAAGTTAGAGATCTGTAATCTGACACCAGACACTCTTTCAAGTGAAGATGTGAGCCGCTGGAACTACAGCCAATTTGACGGCAACTGGAGGGTGGGATCCAGCGCAGGAGGCTGCAGGAACAACCCAGCTACATTTTGCTCAAACCCTCAGTTTGTGATCAAGCTggaggaagaagatgatgatCCTCATGATGGAGAGGATGGCTGCACAATCCTAGTGGGTCTGATGCAGAAAGACGGTCGTAAAGACAAGCGGTTTGGACGAGACCTGAACACCATTGGGTTCGCTATCTATAAGGTTCCAGATCAGATCAAGGGCCGCAGCAACATTATTCTCGGTCCTGATGTACTGCTGCGTCAGAGGTCCATCGCAGGAAGCAACACCTTCATCAACCTACGAGAGGTGAGCGAGCGCTTCAAACTGCCTCCGGGTGAATACGCCATCATCCCATCCACTTTTGAGCCGCATCGCAAAGGAAGCTTCGTACTGCGCGTGTTCACAGAGAAAGAGGCTGATGCCAGCCTCATGGACACGGATATCAGTGCAAATGTGAAAaagcAATACATATCTGAAAGTGACGTGGACCCACATTTCAAACACCTTTTCAATAAAGTTGCTGGAAGTGACTCTGAGGTGTCTGTATTTGAACTACAGCAGATCCTGGACAGCGTTACCTCAAAACGAACCGATGTGAAGACGGAAGGATTTAGTATGGAAACCTGTCGCCACATTATGAGCCTGCTAGATAGAGATGGCAGCGGCAAACTTGGTCTTGTGGAGTTTCATATTCTGTGGACAAAGATCCAGAAATATTtggaggtttttaaaaagtatgatACAGACAACTCAGGCACTATGAGTTCACATGAGATGAGGGAGGCCGTGAAAGGAGCAGGGTTCCAGCTGAACAACGAGGTTCTTCAGGTGATCATCTCACGTTACGCCAATCAGCAGTACTCCATTGACTTCGATTCCTTCGTTGGCTGCCTGATTCGTCTGGAAATGCTCTTCAaaatatttaaaacattcgaTAAGAAGGACACTGGGAAAATCGAGCTGGATATCCTGCAGtGGCTCTGCTTGGCCCTCAGTTGAAGATCCACCCACTTCGCACCAGAATTGCACTAGAGGTCAATTCATCATTAAACTGAAGAGGATGCAGAAAAGTCACAAGcaaaattttaaaactaaatatggGTATTATCTAAGCTTGGAATTGCTTAGAGAATGCAATTTGTTTATGGCGCTCAtctgctgaaaataaaacaatttgtcACCTAAATTCA

Function

symbol description
capn8 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: calpain-2 catalytic subunit-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223524.1 True 2365 mRNA 0.48 21 12713295 12722332

Neighbor

gene id symbol gene type direction distance location
LOC122327869 LOC107755343,LOC107655376 coding upstream 14259 12688924 ~ 12699036 (+)
mrps28 LOC107659331 coding upstream 54580 12658064 ~ 12658715 (+)
LOC122327087 LOC107659305,LOC107722666,LOC107755331,LOC107655385,LOC107569131,LOC101886628 coding upstream 63221 12645181 ~ 12650074 (+)
dnaja3b dnaja3b,LOC107716437,LOC107659308,LOC107655350,LOC107715716,LOC554962,LOC107569120 coding upstream 170611 12536097 ~ 12542684 (+)
vasna vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741 coding upstream 209318 12485205 ~ 12503977 (+)
capn2l capn2l,LOC107722669,LOC107755345,LOC107659324,LOC107655374,LOC107565171 coding downstream 530 12722862 ~ 12732856 (+)
LOC122327873 LOC107755346,LOC107566053,LOC107659322,LOC107742088 coding downstream 50219 12772551 ~ 12783452 (+)
adcy9 adcy9,LOC107755348,LOC107566672,LOC107659321,LOC107655369,LOC107742090,LOC107566051 coding downstream 63493 12785825 ~ 12812611 (+)
crebbpa LOC107742089,LOC107655368,LOC107755349,LOC107566670,LOC107566050 coding downstream 90829 12813161 ~ 12852216 (+)
slx4 LOC107755350,LOC107659319,LOC107566668 coding downstream 130109 12852441 ~ 12862677 (+)
G152122 NA non-coding upstream 56866 12655949 ~ 12656429 (+)
G152083 NA non-coding upstream 58221 12604088 ~ 12655074 (+)
G152115 NA non-coding upstream 70800 12642057 ~ 12642495 (+)
G152101 NA non-coding upstream 83995 12589913 ~ 12629300 (+)
G152092 NA non-coding upstream 92619 12580839 ~ 12620676 (+)
G152140 NA non-coding downstream 25249 12747581 ~ 12747956 (+)
G152142 LOC107569129,LOC107742087,LOC107655331,LOC107755334 non-coding downstream 32014 12754346 ~ 12793226 (+)
G152161 NA non-coding downstream 178938 12901270 ~ 12970358 (+)
G152173 NA non-coding downstream 225570 12947902 ~ 12956791 (+)
LOC122327168 NA non-coding downstream 294911 13017243 ~ 13028266 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 289373 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 367545 12345206 ~ 12345750 (+)
G152032 NA other upstream 418578 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 436687 12010469 ~ 12276608 (+)
LOC122327156 NA other downstream 345082 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 385174 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 454095 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 660821 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 682510 13404842 ~ 13509252 (+)

Expression


Co-expression Network