sde2 (sde2)


Basic Information

Item Value
gene id sde2
gene name sde2
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12653941 ~ 12658148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223531.1
ATCCGAGGGTGGTAAAAACGCAGCGTTTGGGTAGTAGAGATGATCTGGAGCACACGCTGTGCATCACCTTGCAGAGCGACGCCATGTTGCTACGTCATACACAGCAGGGCACGCTgggaacatttcaaaataaTTCTGTCAACGCAATTAATACGTCACAGGTTTTAACGGAAGTTTATAAGCACGTCTTCGGGAACAGACGAGGCGAAGACATGGAGTTCTTTGTAATTTCACCGAATTTGAGGTTTATTAACCTTCGCGTCGCCCCGGGCTCGACAGTCAGCGATCTCATCGATCGTTTTGCCGTTACAGAGggcgcctccttcgcggatTTCTACGTGAAGAGTAACGGTCGGATATCTCGGAGCAACGAGTCTCTTCAGTCTGGAGCTGTGTACCGTGTGGAGCCTCGGTTATGTGGAGGAAAAGGAGGATTTGGCTCTATGCTGAGGGCCCTTGGTGCACAAATCGAAAAGACCACTAACCGTGAGGCGTGCAGAGATCTGAGTGGAAGGAGACTGAGAGACGTCAATCACGAGAAACAGATGGCGGATTGGCTGAAAAAGCAGGCGGATCGCGAGGCGGAGAAGGAGCAGCGTCGTCTGGAGAGGATTCAGAGGAAACTCGCCGAGCCCAAACATTATTTCACAGACACTGATTATGAACAGCAGTGCCACGACCTTTCAGAGAGACTGGAGGACTCGGTGCTGAAGGGCATGCAGGCTTCCTCTAGTGGTCTCGTCAAGGTGGACGAGGGGCCGAGTCGCAAGCGTCCGACACCAGCCGACAgtgaaaagaaagcaaagaagaaatgtttctgGTCTGGTCTCGGGGGACTGGAGGAGACGGGCAGCTCCGGTGAAGGAAGTGAGGACAGCGACGGCGAGGCTTTTCCGTCCACCTCTGGGGCTTCGTGCAGTTCAGATGCAGCTAAACGGGCCGCGCAGCCGCCGGCTTCCACCAGAGGGAGTAACGGGACCGACCCTCGGGAGCGGCCCGGCGGCTCCAGCAGCTCCTCCTCCCGGAGTCCCGCGCCGAGCTCCCCAgcacaggaggaggaggaggaggtgcaGAAGAACACCGAAAAAGAGTCTACAGCTGAAACCGGTCAAAACGGCAGCATCGAAGAGAATAAATCGAGTCCCGCACCGAGCTCCTCAAcacaggtggaggaggaggaggaagtggTGGTGGTGCAGAAAGGGTGTACATCTGAAACCGGCCAAAACGTCACCGGTGATGAGGATAAATCACAGGTGGAGCCCGCAGAAGCAGAGAGCAGTCGGGCACAGGAAGAGGAGGCGGAGGGTCCGCTGGATCTACTGTCCGCGAGTGGGCCGGAGCAGCTGGAGGCTTTGGGTCTGGAGCAGCTGAAGAAAGAGCTGATGGAACGAGGGATGAAGTGTGGAGGAACGCTGCAGGAACGGGCCGCACGTCTCTTCTCCGTCAAAGGACTGAGTCCAGATCAGATTGACCCCGCGCTCCTGGCCAAACCCACCAAGGGCAAGAAGAAATAACCAGCGTTTTTAACCAATTCCTTTTGCTTATATTTGGCTTTTCTgtagttatttttgtaaagtgtCATTTGTAAAAATCCTCAGATTGGGGCAATAACGAGtgctaagtttttttttgtttttttttccccaaattagAGTGACCTTACTGGTCTTCGTCAGTAATACAGgctcatttacaaaaaaaatcattttgtaatcTGTACAATCCATCCTACATTGTGTATATAGTTGGTTTATGCAGAGGCATTCTGAGAATCAATCAGGTTTATTTTCTAAGAGCTAGCCCACAGATGGTCCACCTTGCACAGTATTTGACTGTATATGACTTTATCAATAAAACATAGTTGCacaa

Function

symbol description
sde2 Predicted to enable DNA binding activity. Predicted to act upstream of or within DNA replication and cell division. Predicted to be active in nucleus. Orthologous to human SDE2 (SDE2 telomere maintenance homolog).

NR:

description
Zgc:112095 protein, partial

GO: NA

KEGG:

id description
K25059 SDE2; replication stress response regulator SDE2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223531.1 True 1872 mRNA 0.52 8 12653941 12658148

Neighbor

gene id symbol gene type direction distance location
wdr83 wdr83 coding downstream 333 12650198 ~ 12653608 (-)
yju2b ccdc130,LOC107655383,LOC107569130,LOC107722659,LOC107659306 coding downstream 12612 12634970 ~ 12641329 (-)
LOC122327652 LOC107755339,LOC107655386,LOC107722668,LOC107659332,LOC107565182,LOC107755338 coding downstream 19946 12616316 ~ 12633995 (-)
LOC122327651 c3b.2,c3b.1,LOC107659332,LOC107755338,LOC107655386,LOC107565182,LOC107569121,LOC107755339,LOC107722668 coding downstream 38413 12598143 ~ 12615528 (-)
LOC122327653 c3b.1,LOC107659332,LOC107722668,LOC107755339,LOC107565182,LOC107655386,LOC107755338 coding downstream 57476 12578511 ~ 12596465 (-)
capn1b LOC107755342,LOC107655377,LOC107565170,LOC107659327,LOC107722661 coding upstream 1026 12659174 ~ 12670694 (-)
capn2b capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344 coding upstream 12659 12670807 ~ 12681564 (-)
b3galt11 LOC107755332,LOC107565188,LOC107659304,LOC107742103,LOC107655348,LOC107566034 coding upstream 80575 12738723 ~ 12746888 (-)
LOC122327893 LOC107755333,LOC107659309,LOC107565190,LOC107655328,LOC107742102,LOC107566033 coding upstream 92110 12750258 ~ 12751462 (-)
b3galt10.1 LOC107755334,LOC107659303,LOC107565179 coding upstream 95649 12753797 ~ 12756479 (-)
G152351 NA non-coding downstream 108814 12544901 ~ 12545127 (-)
G152341 LOC107659297,LOC107716435,LOC107569129,LOC107715742 non-coding downstream 174489 12474768 ~ 12479452 (-)
G152340 NA non-coding downstream 218985 12434581 ~ 12434956 (-)
G152339 NA non-coding downstream 226969 12426756 ~ 12426972 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding downstream 227853 12418358 ~ 12426088 (-)
G152363 NA non-coding upstream 24942 12683090 ~ 12683385 (-)
G152386 NA non-coding upstream 90074 12748222 ~ 12748440 (-)
LOC122327774 NA non-coding upstream 286146 12944294 ~ 12953144 (-)
G152454 NA non-coding upstream 344225 13002373 ~ 13002884 (-)
G152463 NA non-coding upstream 379231 13037379 ~ 13037599 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 85214 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 290546 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 508366 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 604403 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 808799 11841588 ~ 11845142 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 247985 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 539886 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 721541 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 919653 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 1167221 13825369 ~ 13829699 (-)

Expression


Co-expression Network