uhrf1 (uhrf1,LOC107561590)


Basic Information

Item Value
gene id uhrf1
gene name uhrf1,LOC107561590
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2735159 ~ 2748590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223536.1
GGCGGGAGGGGAAACACGTTGTTGAACACTTTTATTGATTCGAGCCCCAGTTCCAGCGCGTTTCGCGGCAGTATCGAACTGTAACAAAAGTGCAACGTTTTCACACTTTCAGCgctttaattgaattaaaaccGCGTCTTCTGTTCTCAAGAGGAAGATTACAGGTTTGCCGCCATGTGGATCCAGGTGCGCACTATGGATGGCAAGGAGACCCATCGGGTCGACTCCCTGTCCAAGCTCACCAAGGTGGACGAGCTGCGCGTGAAGATCGCCGAGCTCTTCAACGTCGAGCCCGAGAGGCAGAGGCTCTTTTACAGGGGCAAACAGATGGAAGATGGCCACACGATCTTCGACTATAACGTCGGGTTAAACGACATCGTGCAGCTTCTGGTGCGGCAGGCGCTGCCGTCCACGCCGCTGCCGAAGGACAAAGAGGCTGAACTGTCCGACTCGGACTCGGGCTGCGGCTCGGCTCAGAGCGAGTCCGATAAGAGCTCGACGCACGGAGAGAGCGACGGCCAGAGCGCCGGGACCTCGGGGCAGACCGACGCGTCCGATCTCATCGACCCTGGCTTTGGCTATTACAAAatCAATGAGTTTGTGGATGCTCGAGACTTGAACATGGGGGCCTGGTTTGAGGCGCAGGTTGTCTACGTGACAAAAACAAAGTCTTCGAGCGAAGACGGAGAACCTGATGGGGGCGAGGAGGTCATTTACCATGTCAAGTATGAAGATTACCCTGAGAACGGCGTGGTGCAGCTGCGCGGGAAAGACGTCCGTCCGCGCGCCCGCACCGTCTACCAGTGGCACCAGCTGGAGCAGGGCATGATCGTGATGGTCAACTACAACCCGGACGAGCCCAAGGAGCGTGGCTACTGGTACGACGCCGAGATCCAGAGGAAGAGGGAAACGCGCACCCAGCGCGAGGTTTACGGCAAGATCCTGCTCGGAGACGCTGGCGATTCTCTCAACGACTGCCGCATCATGTTCGTGACCGAAATCTACAAGATCGAGGAGCCGGGAAGCGCGGAGGGTCCAGGAGCCTCTTCCGACAGCCCCCTCAAGAGGTCGAACGGACCCGAGTGCAAGGTCTGCAAAGACGACCCGAAGAAGAACTGTCGCATGTGTAACTGCCGCGTTTGCGGCGTGAAGCAGGATCCCGACAAACAGCTGCTGTGCGACGAATGTGACATGGCCTTTCACACCTACTGCCTGAACCCGCCGCTCACCACCATCCCCACCGACGAGGACTGGTATTGTCCTGAATGCCGTAACGACGCCAGCGAGGTGGTTCTGGCCGGAGAGAAACTGAAGGAAAGTAAGAAGAAGGCCAAGATGGCGTCTGCGAGCTCGTCCAGTCAGAGAGACTGGGGCAAGGGTATGGCGTGTGTCGGCCGAACTAAACAGTGCACCATCGTTCCCTCCAACCATTACGGCCCCGTTCCTGGAGTGCCGGTGGGAACGCTGTGGAAGTTCAGAGTGCAGGTGAGCGAGTCTGGCGTCCACCGGCCTCACGTCGCTGGGATTCACGGCAGGAGTAACGACGGCGCTTACTCTCTGGTTCTCGCCGGAGGCTACGAAGACGACAAGGACGACGGCAACGAGTTCACCTACACGGGCTCCGGGGGTCGCGACCTCTCGGGGAACAAGAGGACGGCCGAGCAGTCGTGCGACCAGAAGCTCACCAACATGAACAGGGCCCTGGCTCTCAACTGTAACGCGGCGGTGAACGAGAAGGAAGGCGCCGAGGCGAGAGACTGGAAGGCCGGGAAGCCCGTGAGAGTCGTGCGCAGCTCCAAGGGACGCAAACACAGCAAGTACTGCCCCGAAGACGGCAACCGCTACGACGGCATCTACAAGGTGGTGAAGTATTGGCCAGAGAAGGGCAAGTCTGGCTTCCTGGTCTGGAGATACCTGCTGAAGCGTAACGATGATGAGGCTGCGCCGTGGACCCGCGACGGAAAAGAGCGCGTCAAGAAGCTGGGCCTCACCATGCAGTATCCCGAAGGTTACCTGGAAGCCGTGGCGGCGAAggaaaaggagaaagagaaggagaacaAGAACGATGAGGAGGTTGAGGAAACGCCCACCAAAGgcaagaggaagaggaaatcCCAGACAGCGGAAGACAAGAGCTCTCCGGCCAAGAGCACACCGAAGAAGATGAAAGTGGAGGCGTACAAACTGAGCAAAGAGCAGAAGGCCTTGATCAAAGACGACGAGCTCAACAAGAAGCTGTGGGACGAGGCCATGCAGTCTCTGAACCTCGGGCCGCGCTTCATCAACAAGGTGGAGGAGGTTTTCCTGTGCATCTGCTGCCAAGAAGTCGTGTTTCAGCCCATCACCACAGAATGCCAACACAACGTCTGCAGGGAGTGCCTTCAGCGGTCTTTCAAAGCCGAGGTCTACACCTGTCCGGCCTGCCGACACGACCTGGGCAAAAACTACCAAATGACGGTGAACAAGCCTCTCCAAGCCGTCCTCACCCAGCTCTTCCCCGGATACAGCAGCGGCCGGTGTTGACGCTGACGCTGTCGGCGCGGCGACGACACGCGGCACGACAGAATTTCCCGAACGAAACATGGAtttcgttctttttttaatatatttaacgaATGCATCAGGTCGTAGGATCGAAGGAAACGCCTTCCGCCTTGATTGAACGCCGCTACTTGATTTGGCCCTGTTTTGTGATCCGCCTCTATCTAGCCACTTGATTTCCGTACGCTGTAGTCGTTTCTTCCGGATTGCGGTCTCCGTGTTTGCGAGTGACGTGATTCTAGTCGTGTTTTAGCTATAGCAGCTTCAAGTGACGTATCGTTGCCTCCTTGTACCTTACACCAGCACAATGAACCATAGCTatgcacaattaaaatgttCGTTAATCGCTTTTCGCAGCAATTTGTCATTGATTTGTATGAAAACGCTGGCTCTAGAATCTCGTTGCTTCACGAAGTGCGTTTTTACAGTACCATCGTTAGCACTAAATGAACTAACGAATGCTCATGTaacaccgtttttttttttttttttttttttttattgcgccATTTGAAGTTACGCTTTCGTACAAATGCTAGTTTAAGGTGCCGTAGCAGtagcgtttttttttactattgttAGCGTTAGCTAAGAACTATCTATGCACTATTATGATGTTTCGTTTTTCACAAGTAGATTTGTCCAAAAGCAGAATCCGGTTAAAATTGTCCCGTTGCGTTatgatcagtttttttttttgtaccacaAGTAACGTTAATTAACTCTAAATGAACTagctatgtttattttttttgccataagCTTTTGTACGAACGTTAAAATCTGAATGTGCCGTAGCAGTAACGACTTTGCCGTACTATCGTTAGCGTTACTAGCTAAGCACTTACGATGTTGGCTAATGTTTCGCGAGCGGTAATCTGACATCGCGCAAAAGTgctggtatttttattttaacgttCGTAAACCGTACCATCTATAGCGTTAACTAAATTGAAAGAACGTGGCTATTTACTATAAACAATGTTTGCAACGTTAATCATTTGACGTTTAACGAGCTTTTGTACGAATTAACATCCGTGAATTTAAGGTGCTGCAGCCGTGACGTTTTACTATACCGTTCGTAGCGTTGACTAAGTAAAAAAGTAACGGCCATGTACTATACACAATATTCGCAATGCTAATATCAGGTTTTTCCTTCGTAAGAATATTGAGATCCACGAGTTTACGGTCCTATAGCGGTAACTTTTACTGTACCATCGTTAGCGCTAACTAAATTTGAATTAGCTATGCGTTTGAGGACGTTATCGCCAGCAGGTTTTGTCGTTTACGACAAAGGCAAGGCTTCGTACAAATGAGTATAAGGTGCCATAGCTTTACTAGCGCACAAACgttattacttttatatctTTTATCGTACTACCGTTATTGGTAACtaactaaatttaataaaaattttacctAATAGTAAATTTACGTAAAAACGACATTGCTTGATGCATTTTTACTCTTTTGATAAGCAACTAAATTTTAATACTATGAAATTAATAGGTATTATCcctctatttttttgtttgtttttcgtttatttgctttgctttttaacTGCTGTATGTTCTTTAGAAATGGTGTCATTTTTCCACTAACTTCTGCCGTTATGCAAACAGTGGTCATGCGCGTGAAACCGCTCCGCGATCTTCGTTTTCGGCCGACGTTTTTGAGTCGATCCCAGATCCGGTTTTAAGCGCTCCTGGTCTGCCTTGACTTATCGGAGGTTTTCGGGGTGAATCCTCGAACCGTTTTTCGCACAAACCCGTACAGATTCTCCTTCAGGAAGTATTTAATTGCATCGTCTCTTTCGCCCGTTGACGTTCTTTTGCTTGTTGTGAGGGTTATAgtgtttgctaaataaaatgccTAAGGCTGCAGATAATTACCttcgttttattatttgtttcccTTAGTTATACCTCAACTATTTCTAATATTTGCATAGATTGGAACTGTATATTCTGAAATTttgaaattgtatattttttagcaCTTGTATTTAGCAATTGTATGTAGTGCTTGGTGCATAGCTATTTTCTTGCACCGGGATGAGTgctatatttttcaataaactttattaaacttttatataaaaataaa

Function

symbol description
uhrf1 Predicted to enable several functions, including hemi-methylated DNA-binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; hypermethylation of CpG island; and intestinal epithelial structure maintenance. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; liver; pleuroperitoneal region; and presumptive neural retina. Orthologous to human UHRF1 (ubiquitin like with PHD and ring finger domains 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase UHRF1

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007049 cell cycle biological_process
GO:0010216 maintenance of DNA methylation biological_process
GO:0016574 histone ubiquitination biological_process
GO:0031100 animal organ regeneration biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0000791 euchromatin cellular_component
GO:0000792 heterochromatin cellular_component
GO:0005657 replication fork cellular_component
GO:0005737 cytoplasm cellular_component
GO:0044729 hemi-methylated DNA-binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223536.1 True 4650 mRNA 0.49 17 2735159 2748590

Neighbor

gene id symbol gene type direction distance location
kdm4b kdm4b,LOC107717157,LOC107742799,LOC107679073,LOC107561592,LOC107549366,LOC107660208,LOC108412081 coding downstream 1329 2690626 ~ 2733830 (-)
ptprsa ptprd,LOC107559826,LOC107679075 coding downstream 265598 2297233 ~ 2469561 (-)
tbxa2r tbxa2r,LOC107744660,LOC107678103,LOC107559829,LOC107562097,LOC107679093,LOC107717168 coding downstream 445832 2282224 ~ 2289327 (-)
si:zfos-943e10.1 LOC107678111,LOC107717170,LOC107559831,LOC107562095,LOC107679086 coding downstream 465304 2256136 ~ 2269855 (-)
gpr35.1 LOC107717171,LOC107678099,LOC107580869,LOC107678091 coding downstream 479699 2251211 ~ 2255460 (-)
fbn2b fbn2b,fbn3,LOC107704489,LOC107742800,LOC108441289 coding upstream 36088 2784678 ~ 2849559 (-)
LOC122328226 LOC107549362,LOC107704491,LOC107742801 coding upstream 127468 2876058 ~ 2878821 (-)
trnad-guc_18 NA coding upstream 130974 2879564 ~ 2879635 (-)
trnad-guc_19 NA coding upstream 131744 2880334 ~ 2880405 (-)
rad23ab rad23ab,LOC107717165,LOC107704496,LOC108271249,LOC107702626 coding upstream 131964 2880554 ~ 2887494 (-)
G148749 NA non-coding downstream 142430 2591572 ~ 2592729 (-)
LOC122327855 NA non-coding downstream 171936 2527094 ~ 2563223 (-)
LOC122328197 NA non-coding downstream 210857 2518437 ~ 2524302 (-)
G148707 NA non-coding downstream 578342 2156256 ~ 2156817 (-)
trnag-gcc_103 NA non-coding downstream 603876 2131213 ~ 2131283 (-)
G148889 NA non-coding upstream 125821 2874411 ~ 2983937 (-)
LOC122327605 NA non-coding upstream 147370 2895960 ~ 2898650 (-)
G148906 NA non-coding upstream 292862 3041452 ~ 3045417 (-)
G148927 NA non-coding upstream 353989 3102579 ~ 3102897 (-)
G149071 NA non-coding upstream 444698 3193288 ~ 3194804 (-)
gpr35.2 NA other downstream 484598 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 618976 2114320 ~ 2116183 (-)
G148613 NA other downstream 1070532 1661185 ~ 1664627 (-)
G148574 NA other downstream 1080819 1643710 ~ 1654340 (-)
LOC122327997 NA other downstream 1120621 1583015 ~ 1614538 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 302810 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 475558 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 506806 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 576985 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 629442 3378032 ~ 3451429 (-)

Expression


Co-expression Network