LOC122327889


Basic Information

Item Value
gene id LOC122327889
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12334278 ~ 12337674 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223554.1
AAGGGAAAAAAGGGAAGCAAATGGGACTATATGATTGCCTGGtaatcctaaaaaaaagaacatcacTTTTGTTAAGCGCTTTTTAAGCTGAAGAAATCTTCAACATtatttgtgTCGACAAACAAGACAAGTGAGGCATGGACTTCAGAATCACATCACTGATTCTTCTTCTGCATGTTTCAGAATCTCTAACATTGAAGCCCATCTTTGTGAGCTGTGAAAGCATTTGCGCTCTGAGGGAAACCCAAGCGCGATTGAAGTGCAATTACGACAACATACACACCAAAACAGCGTTCTGGTTCAGtgagaaacaaagcaaaaactgGAGAAAAAACAATGAACCCGAAGATTTGACTTTAGATTCAGACTACTCTGGACGAGTGGAACAGACCATCAGTAAATACGAAGCGATGCTCATAATATCAGACGTGACAGAGACAGACGCTGGAGAATATCAGCTCATGTTCGTGGATGATGGAGTTAAACATCTCAGCTCAGCAGCCGTCAATCTAACAGTCACAGACCTGCAGGTGAGGATCGGTCCTGCATCTACAGACCCTAGAAATGAGACGGTAGAGCTGACCTGTGAGGCTTCCTGTGATTTGATGTTCAGCAATAAGAATTACTActggaacaaaaacaatattccTCTTCCAGAAGCTAATTCCAGGAGCATTGTAGTTTCACCTGAAGCTCCTGGTAGTTACTCTTGCTCTCGTACTCCTGGTCTTAGCTCATCtcctgtgtGTGTTTCTCAGAGCAGCTGCTGGGATGTGACTTACACCTCTAGAAGAGTCTGTGCTGTGGTGGGATCAACTGTAGAGATTTCCAGCACATACTCACATCCCCCTGGTCATACTGTAAGAAAAACATTCTGGCATTACGGTCCATCTGGTGACTCTAAGGATCTGCATAAGGAGCCTCAATTTTCTGGTCGTGTGGAGTATGTGGAGAACAAACTGAGAATCAAAGATCTCAAGATCAGTGACTCTGGAGAATATAGATTCATGCTCTTCACTGATCTAAATGGCAGATACATTGGATCACCTGGAGTCACTCTTACTGTCACAGatacaCAGGTGACAAGAATCCCAAATTTTGTATTCAAGAGACAGGAAGTGACGCTGATCTGTTCAACTAAATGCACTCTGACTGACAAACATACTTGCATCTGGTACAAGAACGGACGACAGGTAACAGATGGGTTCACTAAAGACAACAAGctgtatctggactcagtcagCAGTGAAGAGCTTCAACAGTATTCCTGTGCTTTAGAAGTCAATGTAAAGAGCACTGCGTTCAGTCATTATACAGTCACTCTGCTTGTGTTTTTACCTCAGTTTCTCATCATAGCAGCTCTTTGGATCTGGTTTTTCATCCAAATGAATCGCATTTCaaaatcaaactgaaaacaaaaaataagATGTTCAAGATGTCTTCGTCTACATCTGCTGTCTGTACATCAGAGCTTCTGGAGTGATGTCATTGTGTTCTTCTATTGTGACATCATCACCTAGCAACAGTCAGAACTGTCAGCGGCGACACAGAGATACTGTGATGTCATAAACAGTGacatattatttacttttaatttgcataagtaaacaaatataaaggAAAATAATTGTCCTGTGTAATTACAGAATACACTGTAATAAAGTGATGGGaatactgtattttaactgtaattacacaaaaatgaatgcacaaaaatttaaataaaacaataaaatcca
>XM_043223555.1
AAGGGAAAAAAGGGAAGCAAATGGGACTATATGATTGCCTGGtaatcctaaaaaaaagaacatcacTTTTGTTAAGCGCTTTTTAAGCTGAAGAAATCTTCAACATtatttgtgTCGACAAACAAGACAAGTGAGGCATGGACTTCAGAATCACATCACTGATTCTTCTTCTGCATGTTTCAGAATCTCTAACATTGAAGCCCATCTTTGTGAGCTGTGAAAGCATTTGCGCTCTGAGGGAAACCCAAGCGCGATTGAAGTGCAATTACGACAACATACACACCAAAACAGCGTTCTGGTTCAGtgagaaacaaagcaaaaactgGAGAAAAAACAATGAACCCGAAGATTTGACTTTAGATTCAGACTACTCTGGACGAGTGGAACAGACCATCAGTAAATACGAAGCGATGCTCATAATATCAGACGTGACAGAGACAGACGCTGGAGAATATCAGCTCATGTTCGTGGATGATGGAGTTAAACATCTCAGCTCAGCAGCCGTCAATCTAACAGTCACAGACCTGCAGGTGAGGATCGGTCCTGCATCTACAGACCCTAGAAATGAGACGGTAGAGCTGACCTGTGAGGCTTCCTGTGATTTGATGTTCAGCAATAAGAATTACTActggaacaaaaacaatattccTCTTCCAGAAGCTAATTCCAGGAGCATTGTAGTTTCACCTGAAGCTCCTGGTAGTTACTCTTGCTCTCGTACTCCTGGTCTTAGCTCATCtcctgtgtGTGTTTCTCAGAGCAGCTGCTGGGATGTGACTTACACCTCTAGAAGAGTCTGTGCTGTGGTGGGATCAACTGTAGAGATTTCCAGCACATACTCACATCCCCCTGGTCATACTGTAAGAAAAACATTCTGGCATTACGGTCCATCTGGTGACTCTAAGGATCTGCATAAGGAGCCTCAATTTTCTGGTCGTGTGGAGTATGTGGAGAACAAACTGAGAATCAAAGATCTCAAGATCAGTGACTCTGGAGAATATAGATTCATGCTCTTCACTGATCTAAATGGCAGATACATTGGATCACCTGGAGTCACTCTTACTGTCACAGatacaCAGGTGACAAGAATCCCAAATTTTGTATTCAAGAGACAGGAAGTGACGCTGATCTGTTCAACTAAATGCACTCTGACTGACAAACATACTTGCATCTGGTACAAGAACGGACGACAGGTAACAGATGGGTTCACTAAAGACAACAAGctgtatctggactcagtcagCAGTGAAGAGCTTCAACAGTATTCCTGTGCTTTAGAAGTCAATGTAAAGAGCACTGCGTTCAGTCATTATACAGTCACTCTGCTTGTGTTTTTACCTCAGTTTCTCATCATAGCAGCTCTTTGGATCTGATGTTCAAGATGTCTTCGTCTACATCTGCTGTCTGTACATCAGAGCTTCTGGAGTGATGTCATTGTGTTCTTCTATTGTGACATCATCACCTAGCAACAGTCAGAACTGTCAGCGGCGACACAGAGATACTGTGATGTCATAAACAGTGacatattatttacttttaatttgcataagtaaacaaatataaaggAAAATAATTGTCCTGTGTAATTACAGAATACACTGTAATAAAGTGATGGGaatactgtattttaactgtaattacacaaaaatgaatgcacaaaaatttaaataaaacaataaaatcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223554.1 True 1739 mRNA 0.40 8 12334278 12337674
XM_043223555.1 False 1685 mRNA 0.41 7 12334278 12337674

Neighbor

gene id symbol gene type direction distance location
LOC122327886 NA coding downstream 2021 12326112 ~ 12332257 (-)
LOC122327888 NA coding downstream 22445 12308943 ~ 12311833 (-)
LOC122327114 NA coding downstream 26667 12300007 ~ 12307611 (-)
vtg8 LOC107715730 coding downstream 55392 12270128 ~ 12278886 (-)
LOC122327050 LOC107570370,LOC107664859,LOC107741528,LOC107664867,LOC107570371 coding downstream 66257 12260109 ~ 12268021 (-)
fam20cl fam20cl,LOC107741571,LOC107664989,LOC107570372 coding upstream 3101 12340775 ~ 12345796 (-)
dnal4b dnal4b,dnal4,LOC107570373,LOC107655394,LOC107715714,LOC108436609,LOC106591471 coding upstream 11344 12349018 ~ 12350814 (-)
nptxrb nptxrb,LOC107570379,LOC107715736,LOC107655393,LOC107664882 coding upstream 15232 12352906 ~ 12357493 (-)
kat14 kat14,csrp2bp,LOC107570376,LOC107659341,LOC107563531,LOC107655392 coding upstream 35935 12373609 ~ 12380711 (-)
LOC122327834 pet117,LOC107741527,LOC107570376 coding upstream 43617 12381291 ~ 12382335 (-)
G152300 NA non-coding downstream 43018 12290916 ~ 12291260 (-)
LOC122327175 NA non-coding downstream 247364 12083507 ~ 12086914 (-)
LOC122327264 NA non-coding downstream 254161 12076741 ~ 12080117 (-)
G152234 NA non-coding downstream 307483 12026112 ~ 12026795 (-)
LOC122327268 NA non-coding downstream 337233 11993123 ~ 11997045 (-)
G152332 LOC107716433,LOC107659337,LOC107575798 non-coding upstream 72926 12410600 ~ 12419443 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding upstream 80684 12418358 ~ 12426088 (-)
G152339 NA non-coding upstream 89082 12426756 ~ 12426972 (-)
G152340 NA non-coding upstream 96907 12434581 ~ 12434956 (-)
G152341 LOC107659297,LOC107716435,LOC107569129,LOC107715742 non-coding upstream 137094 12474768 ~ 12479452 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 188703 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 284740 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 489136 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 529580 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 843624 11465852 ~ 11490654 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 20009 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 223169 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 568459 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 860360 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 1042015 13379689 ~ 13409999 (-)

Expression


Co-expression Network