LOC122327893 (LOC107755333,LOC107659309,LOC107565190,LOC107655328,LOC107742102,LOC107566033)


Basic Information

Item Value
gene id LOC122327893
gene name LOC107755333,LOC107659309,LOC107565190,LOC107655328,LOC107742102,LOC107566033
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12750258 ~ 12751462 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223559.1
CAAATGTTCTGTAAGAGTTTTCTACTGGTTGGCCTCTTCATcctacttaatattttattgctgtATTTCACTGCTACGATCCTCGAAACAAGAAAGTGgcaaaaaatggctaaaaaaaCAGGCAACCCCCATGTTGCTTACCCTCAAAATTACAGATTCATCCTCGACCAGCCAGAGAAGTGTGAACAGCAAAAGCCCTTTGTGGTGATTATCGTCCCCGTGGCCCCGCAGAACATCGAGGCGCGTAACGCCATCAGGATAACATGGGGCAGCGAGGAGCTCGTCCGGGACAAATTGGTGctggttttctttcttctgggCTCACAAAGTGGTAACGATACACTGCAAGAGCAACTACAGAATGAGAGCAAGGAGTATCAAGACCTTCTCCAGAGCAACTTCCTGGACTCCTACAGGAATCTGACCATTAAGACCTTGGTGATGATGGAATGGCTCAACAGAAATTGTCCACAGGCGTCCTACGCAGCAAAAGTGGACGCTGATGTGCTCCTGAATATGAAAAACCTATTACATATGCTTGTGAGTCTGAAATCACTACAACACAACTACATCACCGGCCTAGTATCGTCTGGAAACAATGTCTTGAGAGATCCAGCCAGCAAGTTTTATGTCCCTCACGATGTGTAtcctaaatccagatatcctCCGTACCCTCTGGGCATGTGTTATATCTTTTCTATGGACTTACCAGAGAAGATCCTGCACATTTCCAGGCACATCAGGCCTATTTTTATTGAGGACGCATATCTGGGCATGTGCTTGAAGCGTTTGGGAATCGCACCCAAGAAACCACCAAATATTGGACAGTTTGTGGTCAAGCCACCCCAACGATTCAATCGCTGTTACTATTCTAGACGAATAGCAATACTAACAGATAGCCAGACTCAGCTGATTTCCTATTGGATGGACATTCAAGCAACCAAAATACCCTGCTGAAAAGAACTTGGGAGTCTAATTTTCTGTTTCTAGAAATGAGAATATATGTAGTTACAGGTTCagcttaatgtatttttttacaacagCGGCCTGTTTGTCTAACCCTGGTAGCTGTGTTCTTGTGTCGTTATTGTTTGATACATTTGCATACTAAGCGATACACTTGATCTAcaaatttgaaatggaaaacaaCGCTCTCTTTACAACACTCTCTTATGCCTTCAGGAcacaaataatgtttgtaaaaa

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 2-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223559.1 True 1205 mRNA 0.43 1 12750258 12751462

Neighbor

gene id symbol gene type direction distance location
b3galt11 LOC107755332,LOC107565188,LOC107659304,LOC107742103,LOC107655348,LOC107566034 coding downstream 3370 12738723 ~ 12746888 (-)
capn2b capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344 coding downstream 68694 12670807 ~ 12681564 (-)
capn1b LOC107755342,LOC107655377,LOC107565170,LOC107659327,LOC107722661 coding downstream 79564 12659174 ~ 12670694 (-)
sde2 sde2 coding downstream 92110 12653941 ~ 12658148 (-)
wdr83 wdr83 coding downstream 96650 12650198 ~ 12653608 (-)
b3galt10.1 LOC107755334,LOC107659303,LOC107565179 coding upstream 2335 12753797 ~ 12756479 (-)
glis2a glis2a,LOC107755347,LOC107566676,LOC107659323,LOC107742086,LOC107566055 coding upstream 5249 12756711 ~ 12771161 (-)
mcrip2 si:dkey-44g23.5,mcrip2,LOC107755353,LOC107742098,LOC107566049,LOC107655365,LOC107659318,LOC107566669 coding upstream 111367 12862829 ~ 12867566 (-)
gde1 gde1,LOC107655362,LOC107755351,LOC107742094,LOC107566664 coding upstream 116234 12867696 ~ 12873030 (-)
hmox2a hmox2a,LOC107659301,LOC107742095,LOC107566667,LOC108440694 coding upstream 125352 12876814 ~ 12883196 (-)
G152386 NA non-coding downstream 1818 12748222 ~ 12748440 (-)
G152363 NA non-coding downstream 66873 12683090 ~ 12683385 (-)
G152351 NA non-coding downstream 205131 12544901 ~ 12545127 (-)
G152341 LOC107659297,LOC107716435,LOC107569129,LOC107715742 non-coding downstream 270806 12474768 ~ 12479452 (-)
G152340 NA non-coding downstream 315302 12434581 ~ 12434956 (-)
LOC122327774 NA non-coding upstream 192832 12944294 ~ 12953144 (-)
G152454 NA non-coding upstream 250911 13002373 ~ 13002884 (-)
G152463 NA non-coding upstream 285917 13037379 ~ 13037599 (-)
G152466 NA non-coding upstream 303533 13054995 ~ 13055260 (-)
G152468 NA non-coding upstream 304856 13056318 ~ 13056558 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 181531 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 386863 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 604683 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 700720 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 905116 11841588 ~ 11845142 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 154671 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 446572 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 628227 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 826339 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 1073907 13825369 ~ 13829699 (-)

Expression


Co-expression Network