cry4 (cry4)


Basic Information

Item Value
gene id cry4
gene name cry4
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 896228 ~ 903773 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223632.1
GGGAGCGAGGAGGGCGGGATTCGGTCAAGTAAGCGTCGTCGCCCGGTTGAAACGTTTCTTTCCACGTTATAACCGgctaataattattaactagTTATCGGTGATTTCGGTGAAACGCGCGGGTCGTGTTTCTGACTTTTAATTGGGTGACGTCGACTAATGGATTGTGCCTGAGGCGATTCGGAGAGCGGCGTGATGAGTCACCGCACCCTCCATCTCTTCCGTAAGGGCCTGCGGCTGCACGATAACCCCACCCTGCTGGGGGCGCTGGAGAGCTCGGCCGCGCTCTTCCCCGTCTACGTCCTGGACCGCTCGCTCCTGCAGGGGGCGCTGCGCTTGGGCCCGCTGCGCTGGCGCTTCCTCCTGCAGAGCCTGGAGGATCTGGACGCTAGTCTGCGGGCGCTAGGCTCGCGGCTCTACGTCGTGCGCGGGGCGACGGCGGCGGTGCTGAGCGACCTCGTGACCCGCTGGGGCCTGACGCAGATCAGCTACGACACCGAGGTGGAGCCGTATTACGCCCGCATGGAGCAGGAAATACACGAGCTAGCGGAGGAGCGCGGACTCCAGACGTACACGCATGTGTCGCACACACTCTACGACGTCAGGAGGATCGTGAAGGCCAACGGCGGCTCTCCTCCGCTCACCTACAAGAACTTCCTgcatgttttgtctgttttgggTGAACCGGAGAAACCGGTGCGGGACGTCGGCGCAGAGGACTTCCTGAGATGCTGGACCCCCGTGGAGCCGGATCACCAGCAGGCGTATGGAGTCCCGTCTCCGGCTGACCTGGGTCTGGACGTCCCGTCTGAGGTGTCGTGGCCCGGCGGAGAGACACACGCTCTCCAGAGACTCCACAAACACTTCCAGAGTCAGGGATGGCTGGAGAACTTCTCCAAAGCGCGGACGCTCCCGAGCTCTCTGCTGCCGAGCACCACGGGCCTGAGTCCCTACCTGAGTCTGGGCTGTCTGTCGGCCCGCACCTTCTACCACCGGCTCAGCGGCGTCTCCGCTCAGCCGAAGAACCACTCGTTGCCGCCCGTGTCTCTGCAGGGTCAGGTTCTGTGGCGTGAGTTCTTCTACACCGTCGCGTCCTCCACGCCCAACTTTACTAAAATGCGAGGGAACCCCATCTGTCTGCAGATCGACTGGTACCAGGATCCAGAGGCTCTGGAGAAATGGAGAACCGCTCAGACGGGCTTCCCCTGGATCGACGCCATCATGACCCAGCTGAGGCAGGAGGGCTGGATCCATCACCTGGCGCGGCACGCCGTGGCCTGCTTCCTGACCCGAGGAGATCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTCGAGGAGTTCCTGCTGGACGCGGACTATAGCGTGAACGCTGGGAACTGGATGTGGTTATCTGCTAGCGCGTTCTTCCACAAATACACCAGGATCTTCTGCCCCGTGCGCTTCGGCCGCCGGACCGACCCTCAAGGACAGTATCTGAGGAAGTACCTGCCCGTTCTGAAGAACTTCCCTTCGCAGTATATTTATGAGCCGTGGAAAGCTCCAGAAGACGTCCAGCTCCGCGCCGGCTGCATCATCGgcAAGGACTATCCTCGTCCCATGGTGTGCCACACAGAGGCCAGTCAGAGGAACCTGGGTTTGATGCGTCAGGTGCGCACCGAACAGCAGAACACGGCCGAACTCACGCGAGGTAAAGCGTACGACGTCGATATTCTCTCTATGTCACCTTCAAAGGGTCATAAATGGTTTGATCTGCTCAAAGATTTGGCGGATGATCCGATGGAGGTGGGGCTTAAACGTGAgctgcaggaggaggaggagcttctGGAGGGGGCGGGGCAACACAACATGTCAAAACGTTTCAGCGGGGATGCGGATCATAAGCCCCGCCCCTGCAGCTGGACGCCGGAGACTCTACAGCTGAGCGAAGAGGTCATGTGACTAGAACGGCCCAATCAGACCACACTACTGCGAACAGAAACATGTCGCAGCGAACAGAAAAGACGTTATTTGAACTCTGTTGATCAGTTTGTTTGGTCTGAACACTGTGACCCTCGTTTCACGTTTTTGTTCATGAGAGATTTATCTACACTGAACAGCTGAACGGAAAGAgtgaattataataacatttaattttatgcagCAGTCTTCctaatgcaaatgtgtttttgtccatcgttaaatacatgtttgttatgcaaaacatcaaataaaccATCTGCAAATGTGCTCtggcatgtaaataaatatatagaaatattcaTAA
>XM_043223633.1
GGAGCGAGGAGGGCGGGATTCGGTCAAGTAAGCGTCGTCGCCCGGTTGAAACGTTTCTTTCCACGTTATAACCGgctaataattattaactagTTATCGGTGATTTCGGTGAAACGCGCGGGTCGTGTTTCTGACTTTTAATTGGGTGACGTCGACTAATGGATTGTGCCTGAGGCGATTCGGAGAGCGGCGTGATGAGTCACCGCACCCTCCATCTCTTCCGTAAGGGCCTGCGGCTGCACGATAACCCCACCCTGCTGGGGGCGCTGGAGAGCTCGGCCGCGCTCTTCCCCGTCTACGTCCTGGACCGCTCGCTCCTGCAGGGGGCGCTGCGCTTGGGCCCGCTGCGCTGGCGCTTCCTCCTGCAGAGCCTGGAGGATCTGGACGCTAGTCTGCGGGCGCTAGGCTCGCGGCTCTACGTCGTGCGCGGGGCGACGGCGGCGGTGCTGAGCGACCTCGTGACCCGCTGGGGCCTGACGCAGATCAGCTACGACACCGAGGTGGAGCCGTATTACGCCCGCATGGAGCAGGAAATACACGAGCTAGCGGAGGAGCGCGGACTCCAGACGTACACGCATGTGTCGCACACACTCTACGACGTCAGGAGGATCGTGAAGGCCAACGGCGGCTCTCCTCCGCTCACCTACAAGAACTTCCTgcatgttttgtctgttttgggTGAACCGGAGAAACCGGTGCGGGACGTCGGCGCAGAGGACTTCCTGAGATGCTGGACCCCCGTGGAGCCGGATCACCAGCAGGCGTATGGAGTCCCGTCTCCGGCTGACCTGGGTCTGGACGTCCCGTCTGAGGTGTCGTGGCCCGGCGGAGAGACACACGCTCTCCAGAGACTCCACAAACACTTCCAGAGTCAGGGATGGCTGGAGAACTTCTCCAAAGCGCGGACGCTCCCGAGCTCTCTGCTGCCGAGCACCACGGGCCTGAGTCCCTACCTGAGTCTGGGCTGTCTGTCGGCCCGCACCTTCTACCACCGGCTCAGCGGCGTCTCCGCTCAGCCGAAGAACCACTCGTTGCCGCCCGTGTCTCTGCAGGGTCAGGTTCTGTGGCGTGAGTTCTTCTACACCGTCGCGTCCTCCACGCCCAACTTTACTAAAATGCGAGGGAACCCCATCTGTCTGCAGATCGACTGGTACCAGGATCCAGAGGCTCTGGAGAAATGGAGAACCGCTCAGACGGGCTTCCCCTGGATCGACGCCATCATGACCCAGCTGAGGCAGGAGGGCTGGATCCATCACCTGGCGCGGCACGCCGTGGCCTGCTTCCTGACCCGAGGAGATCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTCGAGGAGTTCCTGCTGGACGCGGACTATAGCGTGAACGCTGGGAACTGGATGTGGTTATCTGCTAGCGCGTTCTTCCACAAATACACCAGGATCTTCTGCCCCGTGCGCTTCGGCCGCCGGACCGACCCTCAAGGACAGTATCTGAGGAAGTACCTGCCCGTTCTGAAGAACTTCCCTTCGCAGTATATTTATGAGCCGTGGAAAGCTCCAGAAGACGTCCAGCTCCGCGCCGGCTGCATCATCGgcAAGGACTATCCTCGTCCCATGGTGTGCCACACAGAGGCCAGTCAGAGGAACCTGGGTTTGATGCGTCAGGTGCGCACCGAACAGCAGAACACGGCCGAACTCACGCGAGATTTGGCGGATGATCCGATGGAGGTGGGGCTTAAACGTGAgctgcaggaggaggaggagcttctGGAGGGGGCGGGGCAACACAACATGTCAAAACGTTTCAGCGGGGATGCGGATCATAAGCCCCGCCCCTGCAGCTGGACGCCGGAGACTCTACAGCTGAGCGAAGAGGTCATGTGACTAGAACGGCCCAATCAGACCACACTACTGCGAACAGAAACATGTCGCAGCGAACAGAAAAGACGTTATTTGAACTCTGTTGATCAGTTTGTTTGGTCTGAACACTGTGACCCTCGTTTCACGTTTTTGTTCATGAGAGATTTATCTACACTGAACAGCTGAACGGAAAGAgtgaattataataacatttaattttatgcagCAGTCTTCctaatgcaaatgtgtttttgtccatcgttaaatacatgtttgttatgcaaaacatcaaataaaccATCTGCAAATGTGCTCtggcatgtaaataaatatatagaaatattcaTAA
>XM_043223634.1
GGTGCTGAGCGACCTCGTGACCCGCTGGGGCCTGACGCAGATCAGCTACGACACCGAGGTGGAGCCGTATTACGCCCGCATGGAGCAGGAAATACACGAGCTAGCGGAGGAGCGCGGACTCCAGACGTACACGCATGTGTCGCACACACTCTACGACGTCAGGAGGTGCGACCGCTAGCAGGATCGTGAAGGCCAACGGCGGCTCTCCTCCGCTCACCTACAAGAACTTCCTgcatgttttgtctgttttgggTGAACCGGAGAAACCGGTGCGGGACGTCGGCGCAGAGGACTTCCTGAGATGCTGGACCCCCGTGGAGCCGGATCACCAGCAGGCGTATGGAGTCCCGTCTCCGGCTGACCTGGGTCTGGACGTCCCGTCTGAGGTGTCGTGGCCCGGCGGAGAGACACACGCTCTCCAGAGACTCCACAAACACTTCCAGAGTCAGGGATGGCTGGAGAACTTCTCCAAAGCGCGGACGCTCCCGAGCTCTCTGCTGCCGAGCACCACGGGCCTGAGTCCCTACCTGAGTCTGGGCTGTCTGTCGGCCCGCACCTTCTACCACCGGCTCAGCGGCGTCTCCGCTCAGCCGAAGAACCACTCGTTGCCGCCCGTGTCTCTGCAGGGTCAGGTTCTGTGGCGTGAGTTCTTCTACACCGTCGCGTCCTCCACGCCCAACTTTACTAAAATGCGAGGGAACCCCATCTGTCTGCAGATCGACTGGTACCAGGATCCAGAGGCTCTGGAGAAATGGAGAACCGCTCAGACGGGCTTCCCCTGGATCGACGCCATCATGACCCAGCTGAGGCAGGAGGGCTGGATCCATCACCTGGCGCGGCACGCCGTGGCCTGCTTCCTGACCCGAGGAGATCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTCGAGGAGTTCCTGCTGGACGCGGACTATAGCGTGAACGCTGGGAACTGGATGTGGTTATCTGCTAGCGCGTTCTTCCACAAATACACCAGGATCTTCTGCCCCGTGCGCTTCGGCCGCCGGACCGACCCTCAAGGACAGTATCTGAGGAAGTACCTGCCCGTTCTGAAGAACTTCCCTTCGCAGTATATTTATGAGCCGTGGAAAGCTCCAGAAGACGTCCAGCTCCGCGCCGGCTGCATCATCGgcAAGGACTATCCTCGTCCCATGGTGTGCCACACAGAGGCCAGTCAGAGGAACCTGGGTTTGATGCGTCAGGTGCGCACCGAACAGCAGAACACGGCCGAACTCACGCGAGGTAAAGCGTACGACGTCGATATTCTCTCTATGTCACCTTCAAAGGGTCATAAATGGTTTGATCTGCTCAAAGATTTGGCGGATGATCCGATGGAGGTGGGGCTTAAACGTGAgctgcaggaggaggaggagcttctGGAGGGGGCGGGGCAACACAACATGTCAAAACGTTTCAGCGGGGATGCGGATCATAAGCCCCGCCCCTGCAGCTGGACGCCGGAGACTCTACAGCTGAGCGAAGAGGTCATGTGACTAGAACGGCCCAATCAGACCACACTACTGCGAACAGAAACATGTCGCAGCGAACAGAAAAGACGTTATTTGAACTCTGTTGATCAGTTTGTTTGGTCTGAACACTGTGACCCTCGTTTCACGTTTTTGTTCATGAGAGATTTATCTACACTGAACAGCTGAACGGAAAGAgtgaattataataacatttaattttatgcagCAGTCTTCctaatgcaaatgtgtttttgtccatcgttaaatacatgtttgttatgcaaaacatcaaataaaccATCTGCAAATGTGCTCtggcatgtaaataaatatatagaaatattcaTAA

Function

symbol description
cry4 Enables photoreceptor activity. Predicted to be involved in circadian regulation of gene expression and entrainment of circadian clock by photoperiod. Predicted to act upstream of or within protein-chromophore linkage. Located in cytoplasm. Is expressed in several structures, including brain; eye; heart; integument; and pleuroperitoneal region.

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0007165 signal transduction biological_process
GO:0003913 DNA photolyase activity molecular_function
GO:0009881 photoreceptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223632.1 True 2266 mRNA 0.57 10 896228 903773
XM_043223633.1 False 2193 mRNA 0.57 11 896228 903772
XM_043223634.1 False 1839 mRNA 0.56 9 896228 902020

Neighbor

gene id symbol gene type direction distance location
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding downstream 475 892588 ~ 895753 (-)
rbbp5 rbbp5,LOC106583489,LOC106565113 coding downstream 17280 871947 ~ 878948 (-)
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding downstream 39474 854664 ~ 856754 (-)
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding downstream 100845 791234 ~ 795383 (-)
cdkn1a NA coding downstream 115588 776693 ~ 780640 (-)
dram2b dram2,dram2b,LOC107726524,LOC107750688,LOC107572549 coding upstream 10176 913949 ~ 918187 (-)
cept1b cept1,cept1b,LOC107572554,LOC103025726,LOC108413012 coding upstream 14645 918418 ~ 925898 (-)
kctd20 kctd20,LOC107572550,LOC107667635,LOC107726526 coding upstream 32658 936431 ~ 941022 (-)
cacna1sa cacna1sa,cacna1s,LOC107667627,LOC105900081,LOC106583479 coding upstream 37544 941317 ~ 959081 (-)
lamb3 lamb3,LOC101885031 coding upstream 96758 1000531 ~ 1011607 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding downstream 8469 881927 ~ 887759 (-)
G148175 NA non-coding downstream 11279 884155 ~ 884949 (-)
G148088 NA non-coding downstream 25464 851155 ~ 870764 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding downstream 94278 799650 ~ 801950 (-)
G148127 med20,LOC107581150 non-coding downstream 135687 687125 ~ 760541 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 2720 906493 ~ 907529 (-)
G148195 NA non-coding upstream 64103 967876 ~ 968788 (-)
G148198 NA non-coding upstream 67175 970948 ~ 972143 (-)
LOC122328046 NA non-coding upstream 68784 972557 ~ 973444 (-)
G148477 NA non-coding upstream 114758 1018531 ~ 1019039 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other downstream 62773 827665 ~ 833455 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other downstream 108017 783851 ~ 788211 (-)
G148119 NA other downstream 216331 674976 ~ 679897 (-)
G148116 NA other downstream 224808 667504 ~ 671420 (-)
tmem240b NA other downstream 302579 590027 ~ 593649 (-)
LOC122328005 NA other upstream 55917 959690 ~ 960903 (-)
G148573 NA other upstream 558100 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 676517 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 679242 1583015 ~ 1614538 (-)
G148574 NA other upstream 739937 1643710 ~ 1654340 (-)

Expression


Co-expression Network