rbbp5 (rbbp5,LOC106583489,LOC106565113)


Basic Information

Item Value
gene id rbbp5
gene name rbbp5,LOC106583489,LOC106565113
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 871947 ~ 878948 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223635.1
CTTTGTTTTGGGGTCCTTCCTCGCAGCTCCGCGCCAGTCGCGCTGCAGTCGCTCTTTGGGAGCGTTttaatgtttccattttttgctgtgtttcccttcatattttaatttttccttCCAAGCACTTATCGGGTTTGTGTTGGTATCACAGCAGAGATGAATCTGGAGTTGCTCGAGTCGTTCGGGCAGAATTATCCAGAGgaggCCGATGGCACCCTGGACTGCATCAGTATGGCTCTGACCTGTACGTTTAACCGCTGGGGGACGCTGCTCGCTGTCGGGTGTAATGACGGACGCATCGTCATCTGGGACTTTCTGACGCGAGGAATCGCCAAGATCATCAGCGCACACATACACCCAGTCTGCtcactcagCTGGAGCAGAGACGGACACAAGCTGGTCAGTGCGTCCACAGATAACATCGTGTCTCAGTGGGACGTCCTGACGGGGGACTGTGACCAGCGCTTCCGCTTCCCCTCACCCATCCTCAAGCTGCAGTACCACCCCCGAGACATGGACAAGGTGCTGGTGTGTCCCATGAAGTCTGCTCCTGTCCTGCTGACGCTGTCTGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCCGACCTCAACGTGGTGGCGGCCTTCGACCGGCGCGGAGAGTACATCTACACCGGCAACGCCAAGGgcaagattctagtgctgaacacaaacacacaggacctGGTGGCGTCGTTCAGGGTGACCACAGGAACCAGCAACACCACCGCCATCAAGTCCATCGAGTTCGCACGCAAGGCCAGCTGTTTCCTCATCAACACAGCGGACCGCATCATCCGTGTGTATGACGGCCGCGAGATCCTGACCTGCGGCAGAGACGGAGAACCTGAGCCCATACAGAAACTACAGGACCTCGTCaacaggACGCCGTGGAAGCGCTGCTGTTTCTCGGGGGATGGTGAGTATATCGTAGCAGGTTCTGCCCGGCAGCATGCGCTCTACATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATCCTCCACGGGACTCGAGGAGAGCTGCTGCTGGACGTCGCTtggCATCCGGTGCGTCCGATCATCGCCTCCATCTCCAGCGGAGTCGTGTCCATTTGGGCCCAGAACCAAGTGGAGAACTGGAGTGCGTTTGCGCCGGACTTTAAAGAGCTGGACGAGAACGTTGAGTACGAGGAGAGAGAATCAGAGTTTGACATCGAGGACGAGGACAGGAGTGAACCGGAGCAGACcggagcgGACGCTGCTGAGGACGAGGAGGTGGACGTCACTTCAGTTGATCCCATCCCAGCGTTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAGGCGCTGCTGTATTTGCCCATCGCTCCGGAGGTGGAGGACCCTGAGGAGAACCCGTTCGGCCCTCCCCCCGACGCCGCGGGTCAGAACGCCACGCCCGACGACGGCTCCGCCCACAGCGGCCCTGGAGACAAAAAACAGCGGCAACCGTCGTCCGACGGAGGGCCCCCCAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCCAGCGACGAGGTCCATCCGCTGCTGGGCGTGAAGGGAGACAGTAAGTCCAAGAAGAAGGCGGCGGGGCGGCCCAAGGGATCGAAAGGTAAAGACAAAGACTCTCCGTTCAGACCCAAAGTCTGCCGGGACAGAGCAGAGGGGCTGGGGACGCCAGGAAACCTGGTGTCGGCGGCGTACAAGCAGCACGAGGTTCAGGGTCTGGACTGAAGGCACGGCGCCCCCTGTCTGTCTGGATGAACCacgctgctctttttttatggACTCTATGGACtgtatttgtgttgttttacatCTCAACGACGCCATCTGATCAGTTTCTTCGCATAGAGAGAGCGATAGGAAGAGGGaatagtgtattttttatttagagtaGATGGATCTGTCTCTGTATAAGCAGTTTGGTCGTATGCTCAGTCAGATGTCTTATATTTGTTCTgcgtttgtttctttattttccgAGActggttgtgttttttttatacctaTTAAACCAGTTTGTTTTTGA
>XM_043223636.1
CTTTGTTTTGGGGTCCTTCCTCGCAGCTCCGCGCCAGTCGCGCTGCAGTCGCTCTTTGGGAGCGTTttaatgtttccattttttgctgtgtttcccttcatattttaatttttccttCCAAGCACTTATCGGGTTTGTGTTGGTATCACAGCAGAGATGAATCTGGAGTTGCTCGAGTCGTTCGGGCAGAATTATCCAGAGgaggCCGATGGCACCCTGGACTGCATCAGTATGGCTCTGACCTGTACGTTTAACCGCTGGGGGACGCTGCTCGCTGTCGGGTGTAATGACGGACGCATCGTCATCTGGGACTTTCTGACGCGAGGAATCGCCAAGATCATCAGCGCACACATACACCCAGTCTGCtcactcagCTGGAGCAGAGACGGACACAAGCTGGTCAGTGCGTCCACAGATAACATCGTGTCTCAGTGGGACGTCCTGACGGGGGACTGTGACCAGCGCTTCCGCTTCCCCTCACCCATCCTCAAGCTGCAGTACCACCCCCGAGACATGGACAAGGTGCTGGTGTGTCCCATGAAGTCTGCTCCTGTCCTGCTGACGCTGTCTGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCCGACCTCAACGTGGTGGCGGCCTTCGACCGGCGCGGAGAGTACATCTACACCGGCAACGCCAAGGgcaagattctagtgctgaacacaaacacacaggacctGGTGGCGTCGTTCAGGGTGACCACAGGAACCAGCAACACCACCGCCATCAAGTCCATCGAGTTCGCACGCAAGGCCAGCTGTTTCCTCATCAACACAGCGGACCGCATCATCCGTGTGTATGACGGCCGCGAGATCCTGACCTGCGGCAGAGACGGAGAACCTGAGCCCATACAGAAACTACAGGACCTCGTCaacaggACGCCGTGGAAGCGCTGCTGTTTCTCGGGGGATGGTGAGTATATCGTAGCAGGTTCTGCCCGGCAGCATGCGCTCTACATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATCCTCCACGGGACTCGAGGAGAGCTGCTGCTGGACGTCGCTtggCATCCGGTGCGTCCGATCATCGCCTCCATCTCCAGCGGAGTCGTGTCCATTTGGGCCCAGAACCAAGTGGAGAACTGGAGTGCGTTTGCGCCGGACTTTAAAGAGCTGGACGAGAACGTTGAGTACGAGGAGAGAGAATCAGAGTTTGACATCGAGGACGAGGACAGGAGTGAACCGGAGCAGACcggagcgGACGCTGCTGAGGACGAGGAGGTGGACGTCACTTCAGTTGATCCCATCCCAGCGTTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAGGCGCTGCTGTATTTGCCCATCGCTCCGGAGGTGGAGGACCCTGAGGAGAACCCGTTCGGCCCTCCCCCCGACGCCGCGGGTCAGAACGCCACGCCCGACGACGGCTCCGCCCACAGCGGCCCTGGAGACAAAAAACAGCGGCAACCGTCGTCCGACGGAGGGCCCCCCAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCCAGCGACGAGGTCCATCCGCTGCTGGGCGTGAAGGGAGACAGTAAGTCCAAGAAGAAGGCGGCGGGGCGGCCCAAGGGATCGAAAGGAAACCTGGTGTCGGCGGCGTACAAGCAGCACGAGGTTCAGGGTCTGGACTGAAGGCACGGCGCCCCCTGTCTGTCTGGATGAACCacgctgctctttttttatggACTCTATGGACtgtatttgtgttgttttacatCTCAACGACGCCATCTGATCAGTTTCTTCGCATAGAGAGAGCGATAGGAAGAGGGaatagtgtattttttatttagagtaGATGGATCTGTCTCTGTATAAGCAGTTTGGTCGTATGCTCAGTCAGATGTCTTATATTTGTTCTgcgtttgtttctttattttccgAGActggttgtgttttttttatacctaTTAAACCAGTTTGTTTTTGA
>XM_043223637.1
CTTTGTTTTGGGGTCCTTCCTCGCAGCTCCGCGCCAGTCGCGCTGCAGTCGCTCTTTGGGAGCGTTttaatgtttccattttttgctgtgtttcccttcatattttaatttttccttCCAAGCACTTATCGGGTTTGTGTTGGTATCACAGCAGAGATGAATCTGGAGTTGCTCGAGTCGTTCGGGCAGAATTATCCAGAGgaggCCGATGGCACCCTGGACTGCATCAGTATGGCTCTGACCTGTACGTTTAACCGCTGGGGGACGCTGCTCGCTGTCGGGTGTAATGACGGACGCATCGTCATCTGGGACTTTCTGACGCGAGGAATCGCCAAGATCATCAGCGCACACATACACCCAGTCTGCtcactcagCTGGAGCAGAGACGGACACAAGCTGGTCAGTGCGTCCACAGATAACATCGTGTCTCAGTGGGACGTCCTGACGGGGGACTGTGACCAGCGCTTCCGCTTCCCCTCACCCATCCTCAAGCTGCAGTACCACCCCCGAGACATGGACAAGGTGCTGGTGTGTCCCATGAAGTCTGCTCCTGTCCTGCTGACGCTGTCTGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCCGACCTCAACGTGGTGGCGGCCTTCGACCGGCGCGGAGAGTACATCTACACCGGCAACGCCAAGGgcaagattctagtgctgaacacaaacacacaggacctGGTGGCGTCGTTCAGGGTGACCACAGGAACCAGCAACACCACCGCCATCAAGTCCATCGAGTTCGCACGCAAGGCCAGCTGTTTCCTCATCAACACAGCGGACCGCATCATCCGTGTGTATGACGGCCGCGAGATCCTGACCTGCGGCAGAGACGGAGAACCTGAGCCCATACAGAAACTACAGGACCTCGTCaacaggACGCCGTGGAAGCGCTGCTGTTTCTCGGGGGATGGTGAGTATATCGTAGCAGGTTCTGCCCGGCAGCATGCGCTCTACATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATCCTCCACGGGACTCGAGGAGAGCTGCTGCTGGACGTCGCTtggCATCCGGTGCGTCCGATCATCGCCTCCATCTCCAGCGGAGTCGTGTCCATTTGGGCCCAGAACCAAGTGGAGAACTGGAGTGCGTTTGCGCCGGACTTTAAAGAGCTGGACGAGAACGTTGAGTACGAGGAGAGAGAATCAGAGTTTGACATCGAGGACGAGGACAGGAGTGAACCGGAGCAGACcggagcgGACGCTGCTGAGGACGAGGAGGTGGACGTCACTTCAGTTGATCCCATCCCAGCGTTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAGGCGCTGCTGTATTTGCCCATCGCTCCGGAGGTGGAGGACCCTGAGGAGAACCCGTTCGGCCCTCCCCCCGACGCCGCGGGTCAGAACGCCACGCCCGACGACGGCTCCGCCCACAGCGGCCCTGGAGACAAAAAACAGCGGCAACCGTCGTCCGACGGAGGGCCCCCCAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCCAGCGACGGAAACCTGGTGTCGGCGGCGTACAAGCAGCACGAGGTTCAGGGTCTGGACTGAAGGCACGGCGCCCCCTGTCTGTCTGGATGAACCacgctgctctttttttatggACTCTATGGACtgtatttgtgttgttttacatCTCAACGACGCCATCTGATCAGTTTCTTCGCATAGAGAGAGCGATAGGAAGAGGGaatagtgtattttttatttagagtaGATGGATCTGTCTCTGTATAAGCAGTTTGGTCGTATGCTCAGTCAGATGTCTTATATTTGTTCTgcgtttgtttctttattttccgAGActggttgtgttttttttatacctaTTAAACCAGTTTGTTTTTGA
>XM_043223638.1
acacacatacacccgGTCTGCtcactcagCTGGAGCAGAGACGGACACAAGCTGGTCAGTGCGTCCACAGATAACATCGTGTCTCAGTGGGACGTCCTGACGGGGGACTGTGACCAGCGCTTCCGCTTCCCCTCACCCATCCTCAAGCTGCAGTACCACCCCCGAGACATGGACAAGGTGCTGGTGTGTCCCATGAAGTCTGCTCCTGTCCTGCTGACGCTGTCTGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCCGACCTCAACGTGGTGGCGGCCTTCGACCGGCGCGGAGAGTACATCTACACCGGCAACGCCAAGGgcaagattctagtgctgaacacaaacacacaggacctGGTGGCGTCGTTCAGGGTGACCACAGGAACCAGCAACACCACCGCCATCAAGTCCATCGAGTTCGCACGCAAGGCCAGCTGTTTCCTCATCAACACAGCGGACCGCATCATCCGTGTGTATGACGGCCGCGAGATCCTGACCTGCGGCAGAGACGGAGAACCTGAGCCCATACAGAAACTACAGGACCTCGTCaacaggACGCCGTGGAAGCGCTGCTGTTTCTCGGGGGATGGTGAGTATATCGTAGCAGGTTCTGCCCGGCAGCATGCGCTCTACATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATCCTCCACGGGACTCGAGGAGAGCTGCTGCTGGACGTCGCTtggCATCCGGTGCGTCCGATCATCGCCTCCATCTCCAGCGGAGTCGTGTCCATTTGGGCCCAGAACCAAGTGGAGAACTGGAGTGCGTTTGCGCCGGACTTTAAAGAGCTGGACGAGAACGTTGAGTACGAGGAGAGAGAATCAGAGTTTGACATCGAGGACGAGGACAGGAGTGAACCGGAGCAGACcggagcgGACGCTGCTGAGGACGAGGAGGTGGACGTCACTTCAGTTGATCCCATCCCAGCGTTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAGGCGCTGCTGTATTTGCCCATCGCTCCGGAGGTGGAGGACCCTGAGGAGAACCCGTTCGGCCCTCCCCCCGACGCCGCGGGTCAGAACGCCACGCCCGACGACGGCTCCGCCCACAGCGGCCCTGGAGACAAAAAACAGCGGCAACCGTCGTCCGACGGAGGGCCCCCCAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCCAGCGACGAGGTCCATCCGCTGCTGGGCGTGAAGGGAGACAGTAAGTCCAAGAAGAAGGCGGCGGGGCGGCCCAAGGGATCGAAAGGTAAAGACAAAGACTCTCCGTTCAGACCCAAAGTCTGCCGGGACAGAGCAGAGGGGCTGGGGACGCCAGGAAACCTGGTGTCGGCGGCGTACAAGCAGCACGAGGTTCAGGGTCTGGACTGAAGGCACGGCGCCCCCTGTCTGTCTGGATGAACCacgctgctctttttttatggACTCTATGGACtgtatttgtgttgttttacatCTCAACGACGCCATCTGATCAGTTTCTTCGCATAGAGAGAGCGATAGGAAGAGGGaatagtgtattttttatttagagtaGATGGATCTGTCTCTGTATAAGCAGTTTGGTCGTATGCTCAGTCAGATGTCTTATATTTGTTCTgcgtttgtttctttattttccgAGActggttgtgttttttttatacctaTTAAACCAGTTTGTTTTTGA
>XM_043223639.1
acacaccggTCTGCTCActcagCTGGAGCAGAGACGGACACAAGCTGGTCAGTGCGTCCACAGATAACATCGTGTCTCAGTGGGACGTCCTGACGGGGGACTGTGACCAGCGCTTCCGCTTCCCCTCACCCATCCTCAAGCTGCAGTACCACCCCCGAGACATGGACAAGGTGCTGGTGTGTCCCATGAAGTCTGCTCCTGTCCTGCTGACGCTGTCTGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCCGACCTCAACGTGGTGGCGGCCTTCGACCGGCGCGGAGAGTACATCTACACCGGCAACGCCAAGGgcaagattctagtgctgaacacaaacacacaggacctGGTGGCGTCGTTCAGGGTGACCACAGGAACCAGCAACACCACCGCCATCAAGTCCATCGAGTTCGCACGCAAGGCCAGCTGTTTCCTCATCAACACAGCGGACCGCATCATCCGTGTGTATGACGGCCGCGAGATCCTGACCTGCGGCAGAGACGGAGAACCTGAGCCCATACAGAAACTACAGGACCTCGTCaacaggACGCCGTGGAAGCGCTGCTGTTTCTCGGGGGATGGTGAGTATATCGTAGCAGGTTCTGCCCGGCAGCATGCGCTCTACATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATCCTCCACGGGACTCGAGGAGAGCTGCTGCTGGACGTCGCTtggCATCCGGTGCGTCCGATCATCGCCTCCATCTCCAGCGGAGTCGTGTCCATTTGGGCCCAGAACCAAGTGGAGAACTGGAGTGCGTTTGCGCCGGACTTTAAAGAGCTGGACGAGAACGTTGAGTACGAGGAGAGAGAATCAGAGTTTGACATCGAGGACGAGGACAGGAGTGAACCGGAGCAGACcggagcgGACGCTGCTGAGGACGAGGAGGTGGACGTCACTTCAGTTGATCCCATCCCAGCGTTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAGGCGCTGCTGTATTTGCCCATCGCTCCGGAGGTGGAGGACCCTGAGGAGAACCCGTTCGGCCCTCCCCCCGACGCCGCGGGTCAGAACGCCACGCCCGACGACGGCTCCGCCCACAGCGGCCCTGGAGACAAAAAACAGCGGCAACCGTCGTCCGACGGAGGGCCCCCCAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCCAGCGACGAGGTCCATCCGCTGCTGGGCGTGAAGGGAGACAGTAAGTCCAAGAAGAAGGCGGCGGGGCGGCCCAAGGGATCGAAAGGTAAAGACAAAGACTCTCCGTTCAGACCCAAAGTCTGCCGGGACAGAGCAGAGGGGCTGGGGACGCCAGGAAACCTGGTGTCGGCGGCGTACAAGCAGCACGAGGTTCAGGGTCTGGACTGAAGGCACGGCGCCCCCTGTCTGTCTGGATGAACCacgctgctctttttttatggACTCTATGGACtgtatttgtgttgttttacatCTCAACGACGCCATCTGATCAGTTTCTTCGCATAGAGAGAGCGATAGGAAGAGGGaatagtgtattttttatttagagtaGATGGATCTGTCTCTGTATAAGCAGTTTGGTCGTATGCTCAGTCAGATGTCTTATATTTGTTCTgcgtttgtttctttattttccgAGActggttgtgttttttttatacctaTTAAACCAGTTTGTTTTTGA

Function

symbol description
rbbp5 Part of protein-containing complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit).

NR:

description
PREDICTED: retinoblastoma-binding protein 5 isoform X1

GO: NA

KEGG:

id description
K14961 RBBP5, SWD1, CPS50; COMPASS component SWD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223635.1 True 2065 mRNA 0.56 14 871947 878948
XM_043223636.1 False 1996 mRNA 0.56 14 871947 878948
XM_043223637.1 False 1918 mRNA 0.56 13 871947 878948
XM_043223638.1 False 1720 mRNA 0.57 12 871947 877621
XM_043223639.1 False 1713 mRNA 0.57 12 871947 877705

Neighbor

gene id symbol gene type direction distance location
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding downstream 15193 854664 ~ 856754 (-)
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding downstream 76564 791234 ~ 795383 (-)
cdkn1a NA coding downstream 91307 776693 ~ 780640 (-)
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding downstream 96404 769663 ~ 775543 (-)
bysl bysl,LOC107569751 coding downstream 113388 753236 ~ 758559 (-)
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding upstream 13640 892588 ~ 895753 (-)
cry4 cry4 coding upstream 17280 896228 ~ 903773 (-)
dram2b dram2,dram2b,LOC107726524,LOC107750688,LOC107572549 coding upstream 35001 913949 ~ 918187 (-)
cept1b cept1,cept1b,LOC107572554,LOC103025726,LOC108413012 coding upstream 39470 918418 ~ 925898 (-)
kctd20 kctd20,LOC107572550,LOC107667635,LOC107726526 coding upstream 57483 936431 ~ 941022 (-)
G148088 NA non-coding downstream 1183 851155 ~ 870764 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding downstream 69997 799650 ~ 801950 (-)
G148127 med20,LOC107581150 non-coding downstream 111406 687125 ~ 760541 (-)
G148089 NA non-coding downstream 313073 482211 ~ 558874 (-)
G148091 NA non-coding downstream 391227 479495 ~ 480720 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding upstream 2979 881927 ~ 887759 (-)
G148175 NA non-coding upstream 5207 884155 ~ 884949 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 27545 906493 ~ 907529 (-)
G148195 NA non-coding upstream 88928 967876 ~ 968788 (-)
G148198 NA non-coding upstream 92000 970948 ~ 972143 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other downstream 38492 827665 ~ 833455 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other downstream 83736 783851 ~ 788211 (-)
G148119 NA other downstream 192050 674976 ~ 679897 (-)
G148116 NA other downstream 200527 667504 ~ 671420 (-)
tmem240b NA other downstream 278298 590027 ~ 593649 (-)
LOC122328005 NA other upstream 80742 959690 ~ 960903 (-)
G148573 NA other upstream 582925 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 701342 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 704067 1583015 ~ 1614538 (-)
G148574 NA other upstream 764762 1643710 ~ 1654340 (-)

Expression


Co-expression Network