Gene
RNA
| Item | Value |
|---|---|
| gene id | G15225 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 3952372 ~ 3952917 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU17015 | True | 546 | lncRNA | 0.35 | 1 | 3952372 | 3952917 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_03867875_03890850 | NA | coding | upstream | 61383 | 3867840 ~ 3890989 (+) |
| CI01000001_03865986_03866675 | NA | coding | upstream | 85220 | 3865357 ~ 3867469 (+) |
| CI01000001_03830254_03833027 | NA | coding | upstream | 119345 | 3830254 ~ 3833027 (+) |
| CI01000001_03821989_03823336 | SLC48A1A | coding | upstream | 128788 | 3821989 ~ 3823584 (+) |
| CI01000001_03719251_03775929 | ITGA5 | coding | upstream | 175947 | 3718190 ~ 3776425 (+) |
| CI01000001_03983212_04011240 | NA | coding | downstream | 30211 | 3983128 ~ 4011596 (+) |
| CI01000001_04085864_04225894 | PLXNA2 | coding | downstream | 132947 | 4085864 ~ 4225894 (+) |
| CI01000001_04296723_04300348 | NA | coding | downstream | 343684 | 4296601 ~ 4300975 (+) |
| CI01000001_04311013_04315588 | NA | coding | downstream | 358096 | 4311013 ~ 4315765 (+) |
| CI01000001_04328211_04330988 | NA | coding | downstream | 374659 | 4327576 ~ 4331052 (+) |
| G15208 | NA | non-coding | upstream | 12692 | 3938659 ~ 3939680 (+) |
| G15202 | NA | non-coding | upstream | 17537 | 3934572 ~ 3934835 (+) |
| G14931 | NA | non-coding | upstream | 73575 | 3878519 ~ 3878797 (+) |
| G14917 | NA | non-coding | upstream | 100324 | 3851831 ~ 3852048 (+) |
| G15239 | NA | non-coding | downstream | 24124 | 3977041 ~ 3977851 (+) |
| G15245 | NA | non-coding | downstream | 28534 | 3981451 ~ 3981654 (+) |
| G15298 | NA | non-coding | downstream | 87385 | 4040302 ~ 4040753 (+) |
| G15287 | NA | non-coding | downstream | 147205 | 4100122 ~ 4133524 (+) |
| G15313 | NA | non-coding | downstream | 150892 | 4103809 ~ 4109360 (+) |
| CI01000001_03618075_03620436 | NA | other | upstream | 330921 | 3618075 ~ 3621451 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 2281368 | 1667762 ~ 1671167 (+) |
| G13051 | NA | other | upstream | 2907220 | 1043713 ~ 1045152 (+) |
| CI01000001_00483853_00488761 | VWA1 | other | upstream | 3460315 | 483853 ~ 488825 (+) |
| G12614 | NA | other | upstream | 3641431 | 309144 ~ 310941 (+) |
| G15794 | NA | other | downstream | 1108301 | 5061218 ~ 5064704 (+) |
| CI01000001_05279884_05287123 | NA | other | downstream | 1333832 | 5279837 ~ 5287698 (+) |
| G15995 | NA | other | downstream | 1758968 | 5711885 ~ 5714951 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 3579655 | 7531541 ~ 7540586 (+) |
| G17234 | NA | other | downstream | 4079207 | 8032124 ~ 8032483 (+) |
