apobec2a (apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292)


Basic Information

Item Value
gene id apobec2a
gene name apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 791234 ~ 795383 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223708.1
gagttcagTTCCAGAGATGGCCGACAGaaagagcagcagcagcggaGGGGTCAGCTCCCGCCTGAGCGTcaggaggaaagagagagcggAGAATGAGGCcaagaaagaggagaaaaccccaaaagaagaagagaaggcCGAGGTGAACGGGACAGGCGCTCCGTCCGAGAACGGGGAGCCCGGGGCCCCTGAAGGAGCCACGGCCAACGGAGAGAACGCAGAGAAACCGGAGCCCATGGAGCTGCCTCCCTTTGAGATCATCACCGGGGATCGCATGGACCCGTTTTTCTACAAGTTCCAGTACAAGAACGTGGAGTACTCCTCCGGCCGGAACAAAACCTTCTTGTGTTACCTGGTGGACCAGGGGCCCGGGGCCAGCGGGCTCCTGCGGGGCTTCATCGAGGACGAGCACGCGAGCGCTCACGCCGAGGAGGCCTTCTTCCAGCAGGTCCTGCCCAGCTACGACCCGGCCCTCAAGTACACCGTCACCTGGTACATGTCGTCCAGCCCCTGCGCCTCCTGCGCCCTGAAGCTGGCCGAGGTCCTGAGGGCCCGCAAGAGCGTGCGTCTGTCCATCTTCTCGGCGCGGCTCTTCGAGTGGGAGGAGCCTGAGATCAGGGCGGGGCTGAAGGCGCTGGCGGCCGCCGGCTGCAAGCTGCGCATGATGAAGCCGCTGGACTTCACCTACACCTGGGACACCTTCGTGGAGAACGACGAGCAGACGTTCACGCCGTGGGAGGACTGCCAGGAGAACTACGAGTACTACCAAGACAAACTGGCCGACATCCTGCAGTGACGAGAAAGAAGCGAGAGCCGACGAACACTTGTCCGAAAGCCAAGAGAATGTGTGCGTTTGAGTGAACGAgagagaaatgtttttacattctttacATCCAGATTCGTTGTGTTCGGGAATCCTCACAGATTCATTCAGTACTTCCATGTTTTCTGTATTCCTGTGAAGAAAAGAGGATTTGTACTTTTAATAATTGGTTCTATGTCTGAATGTGGTTTCTCTTTAGGTGTGACACCTTTCTTATTTCGTGCAGTTTTATATTCTGAACGTCAGCTTCACGTTATTTATCGTTTTATATTCACGCTGGTCAGAGCACAAACCCTCActtcatttaaactgaaaataatggTGCAGCCGTTTATGAAATTGCAAATATTGtgcaagcaataaataaataaaaacattactctGGGAGCTACTTTCACAGttttggaaaacaaataaaactgtattgTTTTGGA

Function

symbol description
apobec2a Predicted to enable RNA binding activity and cytidine deaminase activity. Acts upstream of or within several processes, including cell dedifferentiation; heart looping; and sensory epithelium regeneration. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including adaxial cell; axial hypoblast; cardiovascular system; musculature system; and retina. Orthologous to human APOBEC2 (apolipoprotein B mRNA editing enzyme catalytic subunit 2).

NR:

description
C->U-editing enzyme APOBEC-2-like

GO:

id name namespace
GO:0043697 cell dedifferentiation biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223708.1 True 1257 mRNA 0.53 3 791234 795383

Neighbor

gene id symbol gene type direction distance location
cdkn1a NA coding downstream 10594 776693 ~ 780640 (-)
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding downstream 15691 769663 ~ 775543 (-)
bysl bysl,LOC107569751 coding downstream 32675 753236 ~ 758559 (-)
ccnd3 LOC107656907,LOC107572366,LOC107723118 coding downstream 38399 748168 ~ 752835 (-)
dstyk dstyk coding downstream 52485 722123 ~ 738749 (-)
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding upstream 59281 854664 ~ 856754 (-)
rbbp5 rbbp5,LOC106583489,LOC106565113 coding upstream 76564 871947 ~ 878948 (-)
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding upstream 97205 892588 ~ 895753 (-)
cry4 cry4 coding upstream 100845 896228 ~ 903773 (-)
dram2b dram2,dram2b,LOC107726524,LOC107750688,LOC107572549 coding upstream 118566 913949 ~ 918187 (-)
G148127 med20,LOC107581150 non-coding downstream 30693 687125 ~ 760541 (-)
G148089 NA non-coding downstream 232360 482211 ~ 558874 (-)
G148091 NA non-coding downstream 310514 479495 ~ 480720 (-)
G148081 NA non-coding downstream 317688 472876 ~ 473546 (-)
G148099 NA non-coding downstream 337434 452244 ~ 453800 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding upstream 4267 799650 ~ 801950 (-)
G148088 NA non-coding upstream 55772 851155 ~ 870764 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding upstream 86544 881927 ~ 887759 (-)
G148175 NA non-coding upstream 88772 884155 ~ 884949 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 111110 906493 ~ 907529 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other downstream 3023 783851 ~ 788211 (-)
G148119 NA other downstream 111337 674976 ~ 679897 (-)
G148116 NA other downstream 119814 667504 ~ 671420 (-)
tmem240b NA other downstream 197585 590027 ~ 593649 (-)
G148042 myhz2,LOC108417180,LOC106597527,LOC106596646,LOC107681327,LOC108261437 other downstream 358635 354912 ~ 432599 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other upstream 32282 827665 ~ 833455 (-)
LOC122328005 NA other upstream 164307 959690 ~ 960903 (-)
G148573 NA other upstream 666490 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 784907 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 787632 1583015 ~ 1614538 (-)

Expression


Co-expression Network