cdkn1a


Basic Information

Item Value
gene id cdkn1a
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 776693 ~ 780640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223739.1
TCATAAAAGTTCAGAAAGTCCAGTCAGCGGCAACAGAACGTCTGGAATAAACGGTTCCTGCGGTCCGACATCGATTTTTGCGACACTTTCGCCTCAGAACTCTTCTTAAGTTTAGCTTGAAGCGACTCAACACTGCACTTCACGACCTCTCAAGTACTTTACTCTGAAAAGCGAGTTTTGACTTCTCCACCCGCTCCAGAAGCGTAAAAACATAACTCGAGCTGATGGCCATGCACCAGCGGATCCTGCGGGCCCTCGGGAACGGCCCCGCGCGGAGGAACCTCTTCGGCCCGGTGGACCGCGAGCAGCTCCAGCTGGAGTACCACGACGCCCTGAGGAAAGACCTGGAGGAGGCGTCTCGCCGCTGGGCCTTCGACTTCGCCACCGAGACGCCTCTGGAGGGCGGAGCCTATCGGTGGGAGGGCGTGTCCGGGGTCAAGGTGCCCGTCCTGTACCGCGCCTGTCAGGACGAGAAGGAGAACGTCCCCAGAACCCCCCGGAGGTTCGGCGCCGTCCCGCAGGACGTGGAGAAGACGCCGGAGAAGAGGGCGGAGCTGAAGAGGAAACAGACCAATATCACGGATTTCTACCAAGCGAAGAAGAGAGTAGTGGCCACACCCCGCAAATCAGGacaataataacacacacacacacacacacacacactcaggacTCTTGTTCTCAGGAGGAACTCTGTTTTTTACGCCATCATCTACCTTCATGAGTGTTTTCAGTCGTGTGAGTCACGGACCGAACGCAAGAAACACGTGACGGaccgctcttttttttttttttaattttccatcaTGTTTTCGTGAATGTTACTCGTCTGTGGGAAGTAGTCTCTCTGTCATTTCCTCTTCCTTTTCGTCTTCGCATGTCAACGGTTAACGCTTGTACAAATTTCCGTTAAAGAAAATCCGTTAAAATCCTTTAAAGTCAACTCGATTCTGGGAAGGTTTCAGAATCCGTCTCTCAGCGGGACCGCAAAATTATAACGAAAGTTTCTTTACGAACTTTCAGTGTCCGTGTACACaaatatattgctttattgCACAATACCTGTAgctaattttaaaaactaacgTTTGGTgccaaaagttatttttttgacatataaaagttatttataactCTAACCCTTCTAAGCTGAACTCTCATAAAGGAGCTGCAATTACGTTTTTTACAACGTACAGTTATTGACGAACACTTGACGTCGTTCGTGAAACTCCAGCAGAATGAATTCTAAACCAATTCTTCGCAAATCTTTGCTTCTGCTCGCGTTCCTCGAACGCCGGCGCTGCTAAAACTACAGCATATTTACAAACACAGCGTTCCTTGTAGTCACGGAAACACAAGTAACGCTAGCTTGAAATAAACGCAATCACGGACACGAACGCTAATTGAGATGCTGGATATATTTCTCATTCCAACCAATCTGCTCTTGATCCTCATCCTGATACTTGTAGATTTCTGGGATCTGTCTGTAAATACCCTGTTAATATCTGGATTATCCGCCGTCGATGGAAAATTGCACTTATTATTTTGAGTAGTGTAGCTGGCGCGTGTCTGTTATTGTTCAAGAGCTCAGaatatatgctgtatttattttacgaATAAATATTGTCCTGTAGATTGACATGTAATTGTTCTTGtaataaaactgtttataaagaaaaa

Function

NR:

description
cyclin-dependent kinase inhibitor 1-like isoform X3

GO:

id name namespace
GO:0010165 response to X-ray biological_process
GO:0007050 cell cycle arrest biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K06625 CDKN1A, P21, CIP1; cyclin-dependent kinase inhibitor 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223739.1 True 1680 mRNA 0.46 3 776693 780640

Neighbor

gene id symbol gene type direction distance location
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding downstream 1150 769663 ~ 775543 (-)
bysl bysl,LOC107569751 coding downstream 18134 753236 ~ 758559 (-)
ccnd3 LOC107656907,LOC107572366,LOC107723118 coding downstream 23858 748168 ~ 752835 (-)
dstyk dstyk coding downstream 37944 722123 ~ 738749 (-)
nbl1 nbl1,LOC107573770,LOC107719025,LOC107656914,LOC107690543 coding downstream 115520 650321 ~ 661173 (-)
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding upstream 10594 791234 ~ 795383 (-)
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding upstream 74024 854664 ~ 856754 (-)
rbbp5 rbbp5,LOC106583489,LOC106565113 coding upstream 91307 871947 ~ 878948 (-)
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding upstream 111948 892588 ~ 895753 (-)
cry4 cry4 coding upstream 115588 896228 ~ 903773 (-)
G148127 med20,LOC107581150 non-coding downstream 16152 687125 ~ 760541 (-)
G148089 NA non-coding downstream 217819 482211 ~ 558874 (-)
G148091 NA non-coding downstream 295973 479495 ~ 480720 (-)
G148081 NA non-coding downstream 303147 472876 ~ 473546 (-)
G148099 NA non-coding downstream 322893 452244 ~ 453800 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding upstream 19010 799650 ~ 801950 (-)
G148088 NA non-coding upstream 70515 851155 ~ 870764 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding upstream 101287 881927 ~ 887759 (-)
G148175 NA non-coding upstream 103515 884155 ~ 884949 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 125853 906493 ~ 907529 (-)
G148119 NA other downstream 96796 674976 ~ 679897 (-)
G148116 NA other downstream 105273 667504 ~ 671420 (-)
tmem240b NA other downstream 183044 590027 ~ 593649 (-)
G148042 myhz2,LOC108417180,LOC106597527,LOC106596646,LOC107681327,LOC108261437 other downstream 344094 354912 ~ 432599 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other upstream 3211 783851 ~ 788211 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other upstream 47025 827665 ~ 833455 (-)
LOC122328005 NA other upstream 179050 959690 ~ 960903 (-)
G148573 NA other upstream 681233 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 799650 1580290 ~ 1625907 (-)

Expression


Co-expression Network