p3h2 (p3h2,LOC107664742,LOC107564922,LOC107715694)


Basic Information

Item Value
gene id p3h2
gene name p3h2,LOC107664742,LOC107564922,LOC107715694
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12087165 ~ 12122997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223758.1
AGCTGGGGGTCGTCACGTTAGACAATTGTTATTTCCTTCTTGTGTGGGCTGTAGGAGGAGTCCGCTCAGAATGGATGGGAGGGACGGTGGGGGGGTCATTGCTGAAATGTCCCCAGCAATCGGTCATTCATTATGAGTGACAACGAAACTGCCTTGAAGCTTGGAACGGTAGTTAAGCCGTCACTTTCATTAGCCCGCTCCCTCTAGACCCACCGGGAACAGCGTTCGCTCTCGGAGCGCATTATTTTGCGCACCAGCTTCGGAAGATGGATGTGACCTTCAAAATCTACTGCTTTTTGACATGTATCCTCCAGACCCTTCTGCTGTCATCGGCCACGCTGGAACCGGTCGACCTGCTTTACGATAACGGAGTGGAGGCTTTCTACAAAGGAGACTATGGCAATGTGGTGCGGTACATGGAGGGCGCGCTGAAGACTTTCTCTGAGGTGCGCCAGACCAGAATCAGATGCAGGCTGAAATGCAGCGACCAGCATCGCTTTGACGGCTTTGTGACCGATAAGATTTTTGAAGTGATCCTCTATAGAGGGAACTGCTTAAATCGGTGCATTGAGGGAAAAATCGGAGCACAGTCCATGCATAAAATTAGCGAGGAAGTCGTTCAAGATTTCAATAGAAGAATTCCCTATAACTACCTGCAACTTGCCTACAGAAAACTCGGCCAACTGGACAAAGCTGCATCTGCTGCTCATACGTATTTCCAGGCCAACCCTGAGCATGTGGAGATGGGAGAGGACCTGGAGCAGAACAAAACCCCGAAAGGCGTAAATGAGGAAGACTTTATTGACCGGGAATCCCGCCCACACCAGAAAGCCTTCTTTGCTGGGGTGAAACTCTACGACAAAGGCAGCTACGAAGAGTCTGTGACGCTCTTTGAAAAGGCTCTGACTGAGTATTACCGGGCCGATGTGGAGTGTCGGGCCCTCTGTGAAGGGCCGCAGCACTTTGAAGAGCAGAAACATGTCTTGTACAAATACAATCTCTACGAGCTAATCTCAGATCATTACACACAGGTCCTTCACTGTCAGCACGAGTGTGTCCGGGACTTGGCTACGCGCCCTGGTCGCCTGTCGCCTGTGGAAAACTACCTGCCACTGCATTACGACTACCTGCAATTTGCCAATTTCCAAGCCGGGAGGAATGAAGAGGCATTGAAGTGCGCGCTGACCTACCTGTTGTTCCACGAAGGCGAAGAGTTCATGACTGAGAATGTGGAGTATTACAGGGAGGTGCTGGGACATGATGGCCAGCCTCGCAAGGAAGCTGAACAGTATCGAAGACGGCACAAACAGGAGTTTGATCTGCTCCTCATCGGCAGCAGTAATCTTGGAGTGCCCTATATTGAAGGGAACTACTGGAGCAGTTCAGGCGGTAGAGAAGATGCTAACAGGATTCCTTCTGGTACTGATGGCTGGATGGACTATGTGCCAATATCAGCAAAGAGAAATGTCACAATGTCTATGTTACATGAGCTACAAGAAGGAGGTCCGCTGCTGTATGACAATGTACGACTCGTACAAAACTCGGTCACCCTGAATGGAAGTCAGAGGGTGCTTTTTGATAACGTCATCAGTGAAGACGAGTGCTCTGAGCTCAAACATCTAGCACACACCGTCACTGCAGCTGGTGACGGCTACAAGGGGAAAATGTCTCCTCACACACCAAATGAGAAATTCGAAGGGGCGACAGTATTGAAAACGCTGAAGTTTGGCTACGAGGGACGCGTTCCTTTAAAAAGTGCCCGCCTTTTTTATGATGTGAGTGAGAAGGCCAGGCAGATAATCGAGTCATACTTCATGCTAAACTCTACTCTGCATTTCTCATACACACATCTAGTGTGTAGGACAGCCATATCTGGTCAGCAGGACCATAGAAACGACCTCAGTCACCCAATACATGCCGATAACTGTCTTCTGGACCCAGAAGCAAATGAGTGCTGGAAAGAGCCGCCTGCTTACACCTACCGAGACTACAGTGCCCTGCTGTATTTGAACGGCGACTTTGACGGCGGAGaattcatttttacagaaatggACGCCAAGACTGTCACCGCCTCAGTGAAGCCCAGATGCGGGCGGATGGTGGGGTTCTCGTCGGGCGGTGAGAATCCACACGGTGTGCGAGCGGTCACTAGGGGGCAGCGGTGTGCTGTGGCGCTCTGGTTCACGTTAGACCCCCTCTACAGGGAGCTGGAGAGGCTTCAAGCTGATGAGGTGATTCAAGCCCTCGATAGTCAGCACATGTTGGACCACGGCCTGCATATAAACCCAAAAGACGAGTTGTAGTCCATCATCCAATGGTAGAAAAAGCACAGGgttcattacttatttattgaatgatcagaatgattttatttttttactgtgtgaCATTTTGTTTCTGAGTGTTTgtgagaatattattattattaatattattattagtgtgtgtgtatgacatATCAgttcataattatttgttttcgCAACTTtaaaagtcagcatgaaatcaaCATCGACTCAAAATTATTCCATGGTATTTCTATTCTGGTTTTCATGATCCCTTTTCTGTTGAAATATCCTGTTTGCATCAAATTACGGAAGTAAAATGGGCTCTCGATATATTTTCATGTTGGCTTTAAAAGAAACAGGGAacataattgaaatatttatcataGAAAATATGGTTTGACTTTGGGTTTTATTGAATGTAACGCCATTCATACGGCCAAAGAGTGATTGACACTGTACAACAGCATATATACATAGCTTTTTTTAAGAAGTATTTTATATTCAAGTTAATTTAACTAGACATAATCCAAGTAACCTAACGCAACGGACTATGAAAAATGAGGATTTGCACAGTTACATACTGTGATGTTAATGTACAGCAACTGGTGTACTATGGTTTCCTTCACACTGTGGCACCACAGTGCTTTCAGAAGagttaatttattatgtttacaaATGAACTGACTCGAGCTATGCTGTAGTTTGATCGTAGATGGCTATGGTAGCGAGCGTCAGCATTTGATATTAGCaacctttttaataaaagatgcTATTTGTTCCTGTTTCAAGGAATTTGAACTTAAATGTGGCATATTAATTGTCCTTTCCTTTCAAATTCATTGACTCGTGTTACATATCTCTCTGTGGGTAGTTGAAATGCCTCAGCTCTTGTCGAATTTGAACAAGGACGACGGCCACTTTTTCTCACTGATATTTAATTACATGAGTATTTAAGTctgcttttactgtatgtaATGCACAATGGTGTTtgcaatatgtattttaaattaaagactttattatacttta

Function

symbol description
p3h2 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be active in endoplasmic reticulum. Orthologous to human P3H2 (prolyl 3-hydroxylase 2).

NR:

description
PREDICTED: prolyl 3-hydroxylase 2 isoform X2

GO: NA

KEGG:

id description
K22459 P3H2; procollagen-proline 3-dioxygenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223758.1 True 3317 mRNA 0.45 15 12087165 12122997

Neighbor

gene id symbol gene type direction distance location
LOC122327174 LOC107741537,LOC107564920,LOC107655355,LOC107715710 coding upstream 2604 12082421 ~ 12084561 (+)
ccdc50a ccdc50,si:ch73-6k16.1,LOC107560694 coding upstream 9294 12056820 ~ 12077871 (+)
uchl5 uchl5,LOC107664699,LOC107655412 coding upstream 60413 12022117 ~ 12026752 (+)
glrx2 glrx2,LOC107664942,LOC107560687 coding upstream 65529 12019242 ~ 12021636 (+)
b3galt2 b3galt2,LOC107741544,LOC107715722,LOC107564918,LOC107664691,LOC107560698,LOC107655413 coding upstream 83309 11997220 ~ 12003856 (+)
LOC122327103 NA coding downstream 2496 12125493 ~ 12130315 (+)
wdr47b wdr47b,wdr47,LOC107741541,LOC107664763,LOC107655405,LOC107715726,LOC107560691,LOC107564929 coding downstream 8971 12131968 ~ 12144436 (+)
clcc1 LOC107664769,LOC107741532,LOC107564923,LOC107655407 coding downstream 23363 12146360 ~ 12152024 (+)
mcoln2 mcoln2,LOC107741530,LOC107715711,LOC107655403,LOC107664794,LOC107563519,LOC107577489 coding downstream 31525 12154522 ~ 12164257 (+)
lpar3 lpar3,LOC107564924,LOC107664802,LOC107655404,LOC107563520,LOC107715712 coding downstream 41385 12164382 ~ 12173298 (+)
G151999 NA non-coding upstream 38900 12045852 ~ 12048265 (+)
G151976 NA non-coding upstream 80583 12006268 ~ 12006582 (+)
G151972 NA non-coding upstream 94365 11992590 ~ 11992800 (+)
G151936 NA non-coding upstream 219624 11867082 ~ 11867541 (+)
LOC122327899 NA non-coding upstream 300454 11777483 ~ 11786711 (+)
G152015 LOC107570371,LOC107664873 non-coding downstream 93450 12216447 ~ 12216846 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding downstream 116111 12239108 ~ 12239444 (+)
G151983 NA non-coding downstream 129844 12252841 ~ 12253286 (+)
G152028 NA non-coding downstream 183557 12306554 ~ 12331845 (+)
G152068 NA non-coding downstream 303759 12426756 ~ 12426972 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other upstream 252031 11826565 ~ 11835134 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other upstream 261958 11822934 ~ 11825207 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other upstream 758935 11318107 ~ 11328230 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 1092221 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 1165134 10918089 ~ 10922031 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 52690 12175687 ~ 12189006 (+)
G152032 NA other downstream 170403 12293400 ~ 12294717 (+)
G152043 LOC107741571 other downstream 222209 12345206 ~ 12345750 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other downstream 286309 12409306 ~ 12423922 (+)
LOC122327156 NA other downstream 944417 13067414 ~ 13098756 (+)

Expression


Co-expression Network