s1pr1 (s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065)


Basic Information

Item Value
gene id s1pr1
gene name s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8614242 ~ 8617617 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223775.1
CTCTCTCCAGTCAGAGAAAAATTACCCTACAGTCCTCCACACGAGACTCCAGCGATGCGATAAATACCGCACCTTTGATACATGCACCTTCGATATCTGGCCACATCGCATAGGTATTGCAGGATTAAACGATCAAGACGTTTGGTCTGTAATTTAAAGtgttttcaTGATGCAGTTGTGGGACTTGTGGACCACATTCGTCCTCTCTAAGGATTTTTACCTGACTTGAGAAAAGCTTGCATACATGACATCATACTAAGAGGAGAACTGGATACCCAGCTTCCCAAGTCCACCAGCACCCCTCTGTGGCCTGTGGTGGGTTGCACGTTGGATTTAAAACTACCAAGCCAGTGCGAACCATGGATGACCTAATCGCCAGACACTACAACTTCACTGGGAAATTTCGCAAGGTCGACAAGGACCCGGGACTCAGAGCGGACTCTGTCGTTTTCATCATCGTCTGCTGCTTCATCATCCTGGAAAATGTTCTGGTTCTCCTCACCATTTGGAGGACCAAGAAGTTCCACAAGCCCATGTACTACTTCATCGGCAACTTGGCCTTGTCAGACTTGCTGGCCGGGGTGGTGTACACTGCGAACATCTTGCTGTCGGGGGCCAACACGTATAAGTTGACCCCAACACAGTGGTTCTTCAGGGAAGGGAGTATGTTTGTGGCTCTGGCCGCTTCGGTGTTTAGTCTCTTGGCCATTGCTATCGAGCGACACCTGACCATGCTGAAGATGAAGCTCCACAACAATGGCAAGACCTGCCGGGTCTTTATGCTCATCAGCACCGTGTGGTTCATCGCTGCCATCTTGGGTGGCTTACCAATAATGGGTTGGAACTGCATCGAGAGCATGAACAACTGCTCTACAGTCTTGCCCCTCTACCACAAGACCTACATCCTCTTCTGCACCACTGTGTTCAGCGTCATCCTCATGGCCATTGTCATCCTGTACGCCCGCATCTACGCCCTGGTCCGCACGCGGAGCCGCAAGCTGGTCTTCCGCAAGGTCGCCAACGGCCGCTGCAGCAACAAGAGCTCGGAGAAGTCCATGGCCCTCCTGAAGACCGTCATCATTGTGCTGAGCTGCTTCATCGCGTGTTGGGCGCCGCTCTTTATTCTGCTTCTGCTCGACGTGGCCTGCCAGATCCGCACTTGCCCGATCCTCTACAAGGCCGAGTGGTTCCTGGCTCTGGCCGTGCTCAACTCCGCCATGAACCCTCTGATCTACACCCTGACCAGCAACGAGATGCGCCGGGCCTTCATCAAGATGCTCCACTGCGGTGTGTGTGACCAAGCGGCGGGCAAGTTCTCCCGGCCCATCATGGGCGCAGAGTTCAGCAGGAGCAAGTCGGACAACTCCTCCCACCCCAATAAGGACGAGCCTGAATACTCGCCCAGGGAAACCATAGTGTCTTCTGGGAATATCACCTCTTCTTCTTAAAGGgactttttgtgtacatttacgtctcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggtgtgcaagtgagtgtgtttgtctaGCGCGCTCGTTGTTTGTGATCCGTAACGGTAGTGGAAGGCTGGGAGAAACCAGGATTTGTTGGAAGTCTTGGCTTGCGCCTGCATTAAAGACTTCGTCTTCTGCGGTTCCTGACAGATCGCCTGAACTTTTCTGCAACTTAGGGAAGCACTTAACCAACcattgttcagtttttttttttcttttatccctgTCAAATGGAAACATGTAGACAAGCACTTTTCGGGGAATTGCTCCTTGAGAACCAACATAGGCATTACTGACTCTGTCTAAAATGGATTGATGTGAAACATACTAGCTTGTTATGGTTGTTTGTACTACATTTTTGAGATTAAATTCGAGAAATGCAGTCAAGAGGAACTTGCATTTCTTTGAGTTAACCCTATTTGGTATTAGGATGTTATTTCGCCCCTGATCCagaatgtattttgtatatgtatttgtttttcttcacctTTCAACAAATAAACTGTTGTTGTAGAAGAGTGTGCGTGTACATTAGCTGccaatattaatttatattgaaACAGTTCCAATAAATTTGAAACTCGGAGGGATGGAAATAAGTGTTGTGTtcattaattgtaaatatattttattcgtTTACTTTGGTAGTACGCCATGTATCATAGCTCGTGCACATTGATCTATCCTGCAGGGGTAGTTTTGTCTTTGGTGGGTTGCATGGCACCTCAGCTCTaatgaagtctttttttttttttttgatgggatGGAAAGGTCTGAAGAATTTAAGATTAATGTCTATGTGAATTTTCTGTTGGCATGTCATGATACAACAGACTCAATGTACAGGCTTGTATTTATCCATCTGTTCCTCATATATACAATCAAATCATGAGCCAGTTTATCCCTGTTCAGTGTTGCACATTGTAACATCTAGTCCATGCGTTTGTGTTCTGTTAgttgttaataaatattgttgAAGAAAAAGCAA

Function

symbol description
s1pr1 Enables lysophosphatidic acid receptor activity. Involved in G protein-coupled receptor signaling pathway. Acts upstream of or within several processes, including ameboidal-type cell migration; circulatory system development; and negative regulation of angiogenesis. Predicted to be intrinsic component of plasma membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; fin bud; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human S1PR1 (sphingosine-1-phosphate receptor 1).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 1

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0001944 vasculature development biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG:

id description
K04288 S1PR1, EDG1, CD363; sphingosine 1-phosphate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223775.1 True 2489 mRNA 0.47 2 8614242 8617617

Neighbor

gene id symbol gene type direction distance location
eps15l1a eps15l1,eps15l1a,LOC107757482 coding downstream 45300 8546952 ~ 8568942 (-)
mrpl54 LOC107665512,LOC107588072,LOC107715089,LOC107561894,LOC107757478,LOC107683181 coding downstream 145810 8467114 ~ 8468432 (-)
malt2 malt2,LOC107561899,LOC107588074,LOC107653622,LOC107715088,LOC107757454 coding downstream 147245 8459294 ~ 8466997 (-)
safb LOC107715084,LOC107653619,LOC107561900,LOC107588075 coding downstream 155884 8451074 ~ 8458358 (-)
si:ch1073-396h14.1 LOC107715085,LOC107653620,LOC107588113 coding downstream 164718 8431192 ~ 8449524 (-)
slc30a7 slc30a7,LOC107588064 coding upstream 34192 8651809 ~ 8666722 (-)
vcam1b LOC107669833,LOC107715100,LOC107592710 coding upstream 55889 8673506 ~ 8681447 (-)
gpr88 gpr88,LOC107715102,LOC107669805,LOC107592712,LOC107588121,LOC107653578 coding upstream 65388 8683005 ~ 8684494 (-)
cdc14ab cdc14ab,LOC107669826,LOC107715101,LOC107653633,LOC107588060,LOC107592738 coding upstream 69474 8687091 ~ 8725380 (-)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding upstream 116541 8734158 ~ 8739243 (-)
G151029 NA non-coding downstream 114881 8499126 ~ 8499361 (-)
G151015 NA non-coding downstream 144990 8468471 ~ 8469252 (-)
G151016 LOC107715086 non-coding downstream 193502 8419634 ~ 8420740 (-)
G151020 NA non-coding downstream 201549 8412443 ~ 8412693 (-)
G151017 NA non-coding downstream 204113 8409316 ~ 8410129 (-)
G151086 NA non-coding upstream 189491 8807108 ~ 8808535 (-)
G151110 NA non-coding upstream 298284 8915901 ~ 8917143 (-)
G151111 NA non-coding upstream 331171 8948788 ~ 8949027 (-)
G151112 NA non-coding upstream 331999 8949616 ~ 8950059 (-)
G151122 NA non-coding upstream 527688 9145305 ~ 9147301 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 1498 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 321034 8286372 ~ 8293208 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 995844 7609856 ~ 7618398 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 1558680 7020754 ~ 7055562 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 1700684 6906000 ~ 6913558 (-)
G151107 tal1,LOC107669848 other upstream 266504 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 395931 9013548 ~ 9171931 (-)
gpx4a gpx4a,LOC108429535 other upstream 881052 9498669 ~ 9503006 (-)
G151425 NA other upstream 1340194 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 1664405 10282022 ~ 10321663 (-)

Expression


Co-expression Network