LOC122328076 (LOC107659298,LOC107716432,LOC107570368,LOC107575070)


Basic Information

Item Value
gene id LOC122328076
gene name LOC107659298,LOC107716432,LOC107570368,LOC107575070
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12408361 ~ 12411841 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223781.1
AAAAAAGAGGTTTTGATTTTTCAAAAACCCAGAAATAATATactccaaaaacaaaatgcataaaaaactacacaaaaaatGGCAAAGCACCACTAAATATACACATCCGTTATAAATTTTGagaatgcattatatatatttgagattattgattattgaaatattgataCTGTGTTTTATATCAAAGAAGCATATGAAGTATAAGTGGGTTCCTAATAAAACACTtatgaaaaatagttttctgAAGAGAAATAGGACAAGTACTTGACCAAAATACATCCCAATATGAAATATACAGATAAATTAAGTCATAAAGCATAAGAATATTGCATCTCACGTAGTTTCTTCCAACTCAGTGTCTCAAAACTCAATAACGTTTACTAAAACAGTTTGATAGTTGAAACTTGACGCACCTCAAtagacattttttataattatattttttagcactaaagtttttatatatatatttaaagatgttttgtttaaattaaacctAAACTCACTTGCATTATTAATGAGTGACCTGAAATATGAGTGAGGGAGAACTAAGGTTGTGTCATCAGCAAACTGGAGTAAGAATATTTGAAGTCATTTATATAGATAAGAAACAGAAATGATCCAGTTATAGACCCCTGAGGAACCCCACAGAGTAGACTTGCTTTGCTAGCATAGCAACCCTTAAAACAAACTTTCCTCTATTGCAAATGTTTCAACCTTTaagtgtaaaataatgaaaatcatGTTTGTAGTTAAAAATTCCAACCAGTATTTCATATAATGTTTGTACAGTCATTACACTAGGAAGAGCATTTTATCATTCACTTCACACATGCCTCTGTTCTCTGAAGTGATGATAAAAGGTATCAGAGCAGCATATTTTGTATCAACCAGAGTTAACGTGTCAGATCGAAACAAGAATTACTGGCTTTGGTGAGGTATATAGTTTCATTTAACTCACCCAGGTGCGCTAAGAGAAACAGGCAAATTAAAATGCGTCTAAATCTGTTAACGGGTATAGTAATTTTGCACTCTTACATTAGGTAACAGTTTATCtcaatttaaataacaataattaacaaGTAATTTGTGTAAAGTTCCTCATAATTGTATTGAATAATGTTTAAGCCCCTCCCACAATTCATGAGACGAAACAACTCAACAAACAGCTTCAGCAAAACAATAACATGCGTCTTTCAGCGATTCCTTTAGAAAAGCATTCATGGCGATCAGAAGCATAAGAAAGAGGTGCTGTTTGGCTCAGGATAGAGATTTAATATGTCACGTTAAAACAGGATTAGTTCTGCTAGTCACATTGAGTTTATTGTTTCTCGTCTCTTGTATCTACGTTCTCTCATTTAACCCAGTCAGACATCCTCGCACCTGGTTTAAACCTGTAAATCAAACTCACTCCTATAATATGGTGACTGAGGGCTTGTCTGCCAAGAAATATGTctggaatttttttattgctccTCCAATCattcaaacaacaacaactgcacTAAAGAATCACATTTCAGTGAATCATCATGTGGCTCATCCAAGCAACTATCACTTCCTCATAGATGAACCTAATAAATGTAGTCAGTTGGATCCGTTCCTGGTCTTTATGGTCCCCGTGGCCCCCCATCAGCTGGAGGCTCGTGACGCCATCCGGAGCACATGGGGGAACGAGAGCTCAGTGCAGGGAAAAGCAGTGCTGACTCTGTTCTTGGTGGGTTTGTCTGGAGGAGCTGAAGCTCAACAGCAGCTGGAGGAAGAGAGTCGACAACACAGAGATCTACTGCAGAGCGACTTTGTGGACTCCTACTTCAACCTGACCATAAAGACCATGGTGATCATGGACTGGTTGGCCACTCGCTGCCCTCAAGCAACTTACGCTATGAAGGTTGATTCTGACACGTTCATAAACCTGGAGAACCTGATGAGCCTTTTATTGTCACCCAACACCCCCAGAGAGAACTACATCACAGGGTATTTGATGTGGGACCAAAATGTCATTAGAAACAACAAATCAAAGTATTACGTCTCAGTGGAGCTGTATCCCGAACCGAAATACCCCACTTATGTTTTGGGAGCAGGATATGTGTTTTCCAACGATCTTCCTCAAAAAATAGTTGAGGCTTCCAAAGACATGAAGCCCTTTAACATAGAGGATGCGTATGTGGGCACTTGTCTGAAACGGTTGGGCATTAAACCCTCACGTTCTCCAGATCCTTCTAAGTTTCGAATGTATATGAAGGATTCTAAAACTCACGACCTTTCCAAGGTCATTACGACAATCGCAAGGTCACCGAAGCAGATAATAGAGTTTTGGCAAAGTGTAAAGAGTCTCAAATGAACTGGTAAAACGGGAATGagcaaaatgaaacacaaatgtCCGTATGCTTTCCATATTCAAATTCACAAAGCATTCTCTCTCATTTTTGCCTCTTGTTTCAGGATCACCAAGCCGATGCTTTAGAGGAATTAACCGTCTATATCAACAGCTATCAATAGTATATTCATCATTCAAAAATATGAACCGTATATAGGAGATAAAAGCAGATGTAGGAAACGTTAATAAAACAGTGCTTGTTTACCATTTTGAATATCATTTTAAGCGGATCAAACTGTTATGTTTGCCTATTGCAGTGTTTGGATAAGATCAGGTCTGTGCTGCCTTCATGTACTTTCTCGTTTTAATAACTCTTAATTCTCAGGCACTGACTCGGTCGCAGAATGAACATCCAATCAGTTCTCACCAGCGAACGGGGCAAACTGATGGCCCTAAAAGTAGTCAGTCTGACAGTATTTACATTGTGCGCCagagaaacaacatttttaatgtctgtttttgGCACTAACTGTGTATAACTGTGttgttaatgaataaaaatctggATCATGG

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223781.1 True 2893 mRNA 0.37 2 12408361 12411841

Neighbor

gene id symbol gene type direction distance location
aars2 aars2,LOC107715740,LOC107655390,LOC107575073 coding upstream 129 12398320 ~ 12408232 (+)
rrbp1b LOC107659340,LOC107741526,LOC107715739,LOC107655391 coding upstream 10915 12385990 ~ 12397446 (+)
dzank1 dzank1,LOC107563543,LOC107715701 coding upstream 35204 12364335 ~ 12373157 (+)
lpar3 lpar3,LOC107564924,LOC107664802,LOC107655404,LOC107563520,LOC107715712 coding upstream 235063 12164382 ~ 12173298 (+)
mcoln2 mcoln2,LOC107741530,LOC107715711,LOC107655403,LOC107664794,LOC107563519,LOC107577489 coding upstream 244104 12154522 ~ 12164257 (+)
LOC122327054 LOC107715704 coding downstream 2741 12414582 ~ 12421657 (+)
LOC122327055 LOC107569129,LOC107655331,LOC107715742,LOC107659297,LOC107716435 coding downstream 9840 12421681 ~ 12424702 (+)
LOC122327840 NA coding downstream 57277 12469118 ~ 12471335 (+)
LOC122328225 LOC107716435,LOC107659297,LOC107569129,LOC107715742 coding downstream 61412 12473253 ~ 12478935 (+)
vasna vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741 coding downstream 73364 12485205 ~ 12503977 (+)
G152028 NA non-coding upstream 76516 12306554 ~ 12331845 (+)
G151983 NA non-coding upstream 155075 12252841 ~ 12253286 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding upstream 168917 12239108 ~ 12239444 (+)
G152015 LOC107570371,LOC107664873 non-coding upstream 191515 12216447 ~ 12216846 (+)
G151999 NA non-coding upstream 360096 12045852 ~ 12048265 (+)
G152068 NA non-coding downstream 14915 12426756 ~ 12426972 (+)
G152095 NA non-coding downstream 167441 12579282 ~ 12617819 (+)
G152092 NA non-coding downstream 168998 12580839 ~ 12620676 (+)
G152101 NA non-coding downstream 178072 12589913 ~ 12629300 (+)
G152083 NA non-coding downstream 192247 12604088 ~ 12655074 (+)
G152043 LOC107741571 other upstream 62611 12345206 ~ 12345750 (+)
G152032 NA other upstream 113644 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 131753 12010469 ~ 12276608 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other upstream 219355 12175687 ~ 12189006 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other upstream 573227 11826565 ~ 11835134 (+)
LOC122327156 NA other downstream 655573 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 695665 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 764586 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 971312 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 993001 13404842 ~ 13509252 (+)

Expression


Co-expression Network