polr2eb (polr2e,polr2eb,LOC107669821,LOC107599482)


Basic Information

Item Value
gene id polr2eb
gene name polr2e,polr2eb,LOC107669821,LOC107599482
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9503550 ~ 9506291 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223798.1
AGACACGCGCCGGCAGCGACAGGACTCAAACGTGGAGAGTAAACGGTCCGTTTTGATACTaatattttcctctttttagcACGACATGGACGACGAGGAAGAGACATACAGACTATGGAAAATCAGGAAAACTATAATGCAGCTGTGTCACGATCGAGGTTATTTGGTGACGCAGGACGAACTGGATCAGACTCTCGATGAGTTCAGAAGCCAGTTTGGAGACAAACCCAGCGAAGGTCGACCGCGGCGCACGGATCTCACGGTCCTGGTCGCCCACAACGACGACCCGACCGACCAGATGTTTGTGTTCTTCCCTGAGGAGCCCAAAGTTGGCATCAAGACCATAAAGATGTATTGTCAGCGCATGCAAGAAGAAAACATCACCAGGGCCATCATTGTGGTCCAGATGGGCATGACGCCCTCCGCTAAACAGTCTCTGGTAGACATGGCGCCCAAGTACATACTTGAGCAGTTTCTTCAGCAGGAGCTTCTTATAAACATTACCGAACACGAGctTGTTCCAGAGCACATAGTCATGACTAAAGAGGAAGTGACCGAGTTGTTGGCTCGGTATAAACTAAAGGAAAGCCAGCTTCCTAGGATTCAAGCCGGGGATCCTGTCGCCCGTTACTTTGGTTTAAAAAGAGGCCAGGTTGTTAAGATCATCAGACCGAGTGAAACCGCAGGACGGTACATCACATACAGACTGGTCCAGTAACTCTCGTCAAATTTGAAGTCTTCTCCAATTGCTGAAAGCAaacatgagcatttttttttaaaactaataaatacgtttttgctA

Function

symbol description
polr2eb Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).
polr2e Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in nucleoplasm. Part of RNA polymerase II, core complex.

NR:

description
PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03013 RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223798.1 True 802 mRNA 0.48 8 9503550 9506291

Neighbor

gene id symbol gene type direction distance location
hnrnpm hnrnpm,LOC107599446,LOC107728570,LOC107592680 coding upstream 31048 9465508 ~ 9472502 (+)
rab11ba rab11b,LOC107599444,LOC107592688,LOC107655249,LOC108429533,LOC102310619 coding upstream 49203 9449289 ~ 9454347 (+)
rabgap1l rabgap1l,LOC107728556,LOC107715121,LOC106613570,LOC107592725,LOC106574055,LOC107655181,LOC107669795 coding upstream 143235 9283786 ~ 9360315 (+)
gpr52 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding upstream 186543 9309806 ~ 9317007 (+)
fam163ab LOC107728553,LOC107592741,LOC107669804 coding upstream 221708 9272754 ~ 9281842 (+)
tm6sf2b tm6sf2,LOC107599483,LOC107719666 coding downstream 96159 9602450 ~ 9612501 (+)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665,LOC107687742,LOC107554801 coding downstream 107588 9613879 ~ 9619115 (+)
LOC122327676 nr2c2ap,LOC107687739,LOC107728548,LOC107554809,LOC107719618,LOC107599487 coding downstream 378221 9884512 ~ 9886217 (+)
yjefn3 yjefn3,LOC107687717,LOC107655232,LOC107719609,LOC108429551,LOC107554805,LOC103041169,LOC108271278 coding downstream 490188 9996479 ~ 10028474 (+)
cilp2 cilp2,LOC107728576,LOC107687716,LOC107655229,LOC107719612,LOC107599460 coding downstream 524579 10030870 ~ 10044212 (+)
G151194 NA non-coding upstream 28519 9472986 ~ 9475031 (+)
G151178 NA non-coding upstream 138228 9360428 ~ 9365322 (+)
G151163 NA non-coding upstream 220546 9277690 ~ 9283004 (+)
G150983 NA non-coding upstream 356162 9145211 ~ 9147388 (+)
LOC122327612 NA non-coding upstream 432378 9068732 ~ 9071172 (+)
G151210 LOC107669820,LOC107592722,LOC107655244,LOC107599472 non-coding downstream 8449 9514740 ~ 9515568 (+)
G151294 NA non-coding downstream 94265 9600556 ~ 9667133 (+)
G151308 NA non-coding downstream 255863 9762154 ~ 9762419 (+)
G151333 NA non-coding downstream 388755 9895046 ~ 9895327 (+)
G151334 NA non-coding downstream 390290 9896581 ~ 9896839 (+)
G150965 NA other upstream 514859 8988186 ~ 8988691 (+)
G150946 NA other upstream 581583 8921698 ~ 8921967 (+)
G150945 NA other upstream 583770 8919279 ~ 8919780 (+)
G150940 NA other upstream 601239 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 611351 8890622 ~ 8892199 (+)
G151232 NA other downstream 71388 9577679 ~ 9580151 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 381872 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 389150 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 417256 9923547 ~ 9963634 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other downstream 464331 9970622 ~ 9993441 (+)

Expression


Co-expression Network