scamp4 (scamp4,LOC107717975,LOC107699425,LOC107719549,LOC107679840,LOC107586414)


Basic Information

Item Value
gene id scamp4
gene name scamp4,LOC107717975,LOC107699425,LOC107719549,LOC107679840,LOC107586414
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15130400 ~ 15135596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223844.1
TTCTTGCAATGGGTCTTGTAGTCTTTTAACCGTTACAAACTCCGTCCGCTACGTGCAAAACAGGTCACTTTAGAACTACAATTCCCATGATGCAAGAACACTAGTCCGCCACGGGATTGCTAGGATTCAACGCGACTGCAGACCCATCCTCATCTAACTATTTGGCGGTGCACAGGACGGGAAAACTTCAATTCATCGGAGTGGGAAAAGTTAATTAGTTTaagaaacaaacattaaacaacacAAAGTTGAAAATGACAGATCGAGCGAACAACTTCCCCCCTCTGCCGAAGTTCATGCGCATAAAGCCATGTTTTTACCAGAACGTGGATGAGGAAATCCCGCAGCCCTACCAGCAGCTCGTGCGTCGTATTTACAATCTTTGGATGCtgtaCTGTATAACGCTGTGTGTCAATGTGGTGGCCTGCATAGCCTGGTGGGCCGGTGGAGGTGGAGCGGTCAACTTTGGCTTTGCGCTCCTCTGGCTGCTGGTTTTCAGCCCATGTAGCTACATCTGCTGGTTCAGGCCGCTCTATAAAGCGTTTCGgGCTGATAGTTCCTTCAACTTTATGTCGttcttcttcattttctttctgcaaTGTATTCTTGCCTTCATCCAGAGCCTCGGCCTATCAGGTTGGGGCGCTTGTGGTTGGATTGCCACAGTGGGGTTTTTCGGCACGAATGTGGTCTCGGCTATATTCATGCTCATCTGTACTCTGCTCTTCACCATAGATACAGTTCTAATGGCGTTCATTCTTATCAAGGTTCATCGGCTGTATCGCGGAGGAGGAGGGAGTTTCCAGCGGGCTCAGGAAGAATGGAGCACGGGCGCATGGAAAAACGCCCCGGTGAGAGAAGCCGGATTCAACGCTATCTCTGAAACCGGCCCCAGCCTGCCCCAGTATCCCGCCGCTGTGCCCAGTTACCCCGAGAGCGGGCCCTGGTGATCACCTTTCCTGAACTACAGATGGAACAAGAGCACTGCTTGTCTTATAAATAAAGGGGCAGTTTGCTGTGGGACATCACCCAATATTTTTGCCCCCAGAAAACACTACGGCCAAGACTTGTATATAGTTTCGTCGCTTTTATGCAGTGGTTTTCTTAATGTAGCGAACGGATCTAATGTTCAATCATGTAACGTTCAATCTAATgttacaattttgtttttggagtTAAAACACTTAAACGTGAATGACGATCGAAAATGCGTCTAACCATTTTGTCTAACCAGTTCTGACAAAATGCCAATAAGCAAACTGCTCCTTTAAAATTTCTCTCAGCGCATACTAGTCTTAAACCGACAGCAACGTGGTGGTCCATTCTCATACGAATagcaaaaaagacattttacgTTACTGAATTCATCTCGGTCCACCTGAGcctcgatttttttttttcttttttttgcttagcGCTTTATTGAATTGTTCGATTGAAATCAGAATAGTTGCATATCAAATCGCTGAATTATGTAGAATACCGACGCATATGTTCCGCTGTATCGCGTGCAATCACATTACCGTTTTAgggaaagtgatttttaaaaagagcaaaaagcatgcttttaaaTTCATGGCCGTTTTTCTATTTACCTCGATAAATTCGAGAATCAGTTCTTCTTCAGTTAATTTCAGACTTGAACTCCTCCCTCGCTTTTAAGACTCACAAGCATGCCTGTAAATAGCGTGGCTCGCGTAAGACACCCTTTTGATACTGCAAAGCATcgcagatttaattttttagatCTGTGACTGAGAGTGTTTCTTGCAAACACACCTCGTGTCtgctcttctttttctctccgtTTAAAGCTTTCCACATCTTCTAAACGAAGACCGCCTTAATTCTTCATGCAAATTAAGCATGCGTGAACCGATAGCTTTCGAGTTTCCCTCAAGTGCCACAACTCTGTTGGTGGATGTGGCTACATCctgtgctatttttttaatactggctgttaaatatgtatttgcgTTTATTCCTGGTTTCATTTCAGCAATCATTGTGCACTGCGTTTACAAATGCGGTTGGCGAGGCACTCGTTATAAACATGTGACTTGATCTTTATTACTTTCGTTTTAAGATCTCCCTCCACCGAGCCAAAGGAGGCCGATTTTGAAACGTTCCATGACTAGCCTCGTTTAGCCAAAGTATTTAACAACCCTGTATCTAAAATGTGACTCGAAtggctctctttttttttcaataaagacATTCCTTTTGAGATTGta

Function

symbol description
scamp4 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP4 (secretory carrier membrane protein 4).

NR:

description
PREDICTED: secretory carrier-associated membrane protein 4

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223844.1 True 2234 mRNA 0.44 7 15130400 15135596

Neighbor

gene id symbol gene type direction distance location
ubxn6 LOC107717977,LOC107679838,LOC107593331,LOC107719551,LOC107699423,LOC107586413 coding upstream 10571 15114186 ~ 15119829 (+)
LOC122327882 LOC107679839,LOC107717989,LOC107719633,LOC107699428,LOC107586446 coding upstream 127430 15001033 ~ 15002970 (+)
lmcd1 lmcd1,LOC107662933 coding upstream 164813 14937292 ~ 14965587 (+)
gmppb gmppb coding upstream 193465 14928500 ~ 14936935 (+)
ip6k1 ip6k1,LOC107662926,LOC107705840,LOC107667830,LOC107570931 coding upstream 206506 14895878 ~ 14923894 (+)
ddx59 ddx59,LOC107717990,LOC107578347 coding downstream 54231 15189827 ~ 15194872 (+)
LOC122327180 LOC107593352,LOC107717987,LOC107679830,LOC107593351,LOC107717988,LOC107679833 coding downstream 84851 15220447 ~ 15288892 (+)
aspm LOC107712224,LOC107699437,LOC107586448,LOC107556171,LOC107577714 coding downstream 600305 15735901 ~ 15752487 (+)
LOC122327224 NA coding downstream 743658 15879254 ~ 15886245 (+)
LOC122327226 LOC107556173 coding downstream 765536 15901132 ~ 15938182 (+)
G153065 NA non-coding upstream 18422 15110215 ~ 15111978 (+)
G153050 NA non-coding upstream 23474 15078846 ~ 15106926 (+)
G153056 NA non-coding upstream 40483 15087487 ~ 15089917 (+)
G153053 NA non-coding upstream 46746 15082920 ~ 15083654 (+)
G153039 NA non-coding upstream 59917 14969415 ~ 15070483 (+)
G153083 NA non-coding downstream 739 15136335 ~ 15137623 (+)
LOC122327701 NA non-coding downstream 155099 15290695 ~ 15311067 (+)
G153178 NA non-coding downstream 315853 15451449 ~ 15512639 (+)
G153180 NA non-coding downstream 318368 15453964 ~ 15454729 (+)
G153181 NA non-coding downstream 319316 15454912 ~ 15490268 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other upstream 341707 14782382 ~ 14788693 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other upstream 438592 14686504 ~ 14691808 (+)
G152767 cp,LOC107572087,LOC107732248 other upstream 667740 14458149 ~ 14462660 (+)
ptk7a ptk7a,LOC107702250,LOC107732247,LOC107588446,LOC107550662,LOC107697061 other upstream 817264 14283892 ~ 14313136 (+)
kcnip2 kcnip2,LOC107714153,LOC107679051,LOC107551372 other upstream 1052020 14071476 ~ 14078380 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other downstream 60320 15195916 ~ 15219764 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other downstream 487497 15623093 ~ 15712086 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other downstream 868968 16004564 ~ 16035615 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other downstream 941985 16077581 ~ 16078895 (+)
LOC122327131 NA other downstream 1027787 16163383 ~ 16171629 (+)

Expression


Co-expression Network