G15287


Basic Information

Item Value
gene id G15287
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4100122 ~ 4133524 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17083
ATCTTACTGACCCCAAACCTTTTAACGCTAATGTATTTTGCTACAAAAAAGAAAATGTTGCTTAGGGAATTGGTGATTCATTTTACATGATCAAACATATTAACCGGTTCAGTAAAATGAATCAGACTTCTGAACTCTGCAATTGAGTGAGCAAGGACAATTTAGAAGAGCGCGTTTGATTATTTCCATGGTTTGTGTGACTTTAAAGCTTCGTTCATTCATGTAACATGCTACATTGCTAGTTGTTAGAGAAACTAGCTGACTATACCATTTTGAAAAAAGCTGCACTATTATCGTTTTCCTTGAGAAATGTAGTTATTAGCATCGCTACTTTTAGCTAGCTTTTCCCCAACGCTGTTTTTGTATGCTGTTTGTGGCGACATTAACATCTGAGCCACAAACAGAGCAGTGGGCACGCATGACCAAGCTGATTCCTGTCATCTTGCTTCGTTAGTTAATCAGCATTTGGTTTGGACTGTGTTCCGACAGGGTTTGGAAGAACAGTTCAGGTGGCTTCCTTCTGGCAGCCAATTGAGGCCCTAATTGGACAAATGTCTCATTGAACTGGTTAAGTGAGTTTCTGGGCAACCATCCCACTCTCCTTGACACTGACATCATCGCTGACATGGTGGATGTGTTCAGGACTGGAGCAGGGTCGCAGCCGTGATCTGCAGCTGACTGCGACACATGAAAGAAACTGCAGTTTAGTGGACTTAGCATGCAGCTGTGTCCGCTAGTTAGCTCAACCTCAATTGGTTGTGTCCCAGAAACACCTTTATTTTGTTCTGAGCATCCCTAGTGGACTAAGATGCTGTCTGATGTTCTAGTTGCTAAAGTCTTTGATGAGCTGGGAAACAGCTGGGTTGGTGGCTTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACTCATTGGTTGTTCCAAACCTGTATAAATTTCTTTGTTCTGCTGAACACAAAGGAAGATATTTTTACAGTTGTGAGGCACCATTGACTTCCATAGTATTTTTTTTCCATACTATGGAAGTCAATGGTGTTTGGTTACACAACTGTTTGGTTACAAACATTCTTCAAAATACCTTCCTTTGTGTTCAGGAGAACAAAGAAACTTATATAGGTTTGGAACAACCAATGAGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAACGTGTTTAGCTGTCCCAGCCTGTAGCCTCCTGATTCTACCGTGTCGTCTCTCTTGGATTTGGTCCGTAATGAGCCGTGGCTGAAGACGTGCTGCATTGTCTGGGGAACACAGCAGGAAAAAGAGTTGGAAATGGTGAAGGGGAGAAGAAAAGCTTGAACACGTAACATGTTTTCCAGCACTTCTGTATCTACTTTAGAATAAAGCCGTGTCTGTCTCATGAGAATGCACACAAAACTAGCATATGCTCACTAAAATGTAGCGGTATGCATTTTTAAAGATCCCATGAAATGGCTTGACACAGTTTTCTTTTCTATGTTGGCATGTTTCTTTTTTCATAGTTAAAATCTTTTGTTAACGTCACACTCGTGAAGCATAACTTGCTACTTGCTATTGCTAAAAGACTAAAAGTGTTATTTAAAGGTAATGTTTGGAGTATAGTAGCATATAGATATCTCAAAACTAAAGGTGTGGTCATATTTACAGTTGTTCAGCAATTTCACAGCAGAAATCTTGTCATTTTAATAGGATTCCACGCGACTGGGAATTTCACGCGAGAGCAAAAGATTTCCCAATGCATTGGTCACATGGGTTTATCACGTAAACCAATAGAAATCTGGCTGTAAATTCTGTGTGACTTCTGTGTGAGCAGTGCTTCTTACAATGGACCTTTTTTGCTAAAATTTCACCAATTTGACCACATCTTAACACACATTGGCTAAAAACCATGCACAAAACTTTGATGTTGATTTCATCTTTTATAGAATCTTTCCTCTCTCTCCAGATGTCTACACCAATCTCTCCTTAGAGAGATAGGCAGAGATGATTTTTACTTTATCAGATACTTAATGAGTCATTTAGAAACAGCCTGTCAGTGGCAAAAATGCTCACTAGACTTTGCTCCGCTAAGCAAAACTTGCCCGGCAGTTATGTGTTAATTTGTTTTTTCAAGGTCAAGGGGGCATCCAGCACATTGGTTTTTTCGTACTGGTGGCATTTTCTCAACATACTGCAACACTACAACAAATTCTGCTGTTGTGCGGCAACACAAATTGGTGTATCTGCAATGTCGTCGGCTAAGGTTATACTTTTCTCCTGCTGTTCCATAATTACTTGAATTGAGTGCTTTTTGTAAAAGCCAAGCTTTTCTTCTTTTAATTTCATATTTAGTGTGGTGTTACGTTATCCTTGATTTTCTGGTTCCAGAGAATTTTAGAATCAGCCATTGAGGACAATACAGTATCTGCTGCCAGAAACAAACAGCCAAGGGATGCATTTGTTTAAATGTTCCTCTTGGTCTCAGTGTTGTAAGGAAGCTTCAATTACATTGAATACAAATGAGCAAAACAATAGAACATGAGTTTCAATCATCATAACAATTTCTCACTCCTCCTTCAATTTCATGTTGAATTAGCATCAATCTGCCTGTAAATTGAATGCTTTGTCTTTTTCCATCTGTCTCATATCACTGTAGTGACTTTACCCAAATATGATACAGTGTGACATACAGTGACTCATTATTATTCCCATATATTACAAAAATATAAGTATATATAATTTTTTTATAAAATAAGTGTATGTATATATATATATATATATATATAATTTTTTTAATTAAAATATACATTTATATAAAAAATTAAATTTTACAAATCAATATTTTTAATAAAATATAAAATAAGTTTATATATACACTACCGGTCAAAAGTTTGGAATCGGTAAGATTTTAAAAAAAGTTTCGTCTGCTCACCAAGGCTGCATTTATTTAATTAAAAATACAGTAAAAAACAGTAATATTGTGAAATATTATTACAATTTAAAATAACTGTTTTCTGTTTGAATATATTTTATAAAGTAATTTATTCCTGTGATGGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCACTCTAATATGATGATTTGCTGCTCAAGAAACATTTATGATTATTATCAATGTTGAAAACAGTTGTGTACTTTATTTTCAGGATTCCTTGATGAATAGACAGTTCAAAAGAACAGCATTTATCTGAAATACAAAGCTTTTGTAACATTATACACTACCGTTCAAAAGTTTGGGGTCAGTAAGAATTTTTATTTTTATTTTTTTGAAAAGAAATTAATACTTTTATTCAGCANNNNNNCATTAAATAGATGAAAAGTGACTGTGAAGACATTTATAACGTTACAAAAGATTTCTATCTCACATAAATGCTGTTCTTTAAACTTCCTACTCGTCAAATAATCCTGATAAAAATGTATCATGGTTTCCACAAAAATATTAAGCAACAGAATTTTCAGAATTGATCATAACAAGAAATGTTTCTTGAGCACCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACAATGAAGACTAGAGTAATGATGCTGAAAATTCAGCTTTGCCATCACAGAAATAAATTACATTTTAAAATATATTACATTTGGAAATACTTCTTTTAAATTGTAATAATATTTTACAATATCGCTGTTTTACTGTATTTTTGATCAAATAAATTCAGAGCATATGAGACTTCTTTGAAAAAACATTAATAAATTGTACCGTTCCCAAACTTTGGAATGGTAGTGTCAAGTACTTATGTCTTGCCTACAGTATGTTTCTGGCCTAAGAGCTTAACAGTCATCGCTCAGGCATTTCTTTCCTATTTCACCTCTCACCCTTCCTTTAACTCCATCTCTATTGTTGAACAACCTTACAGAGGTGCCGAAAGAAACAGTAATAAGTGGAAATTTATATATGCTTTCCTGTGTTTCTTAGGGAGGGTCATTTGTGGTAGGCAAGCCTCAAATCCCCTTCCAGCCCTCGCTGCACCTTTGTTCTTATAATATATCGAACAGCCCGAGACAATAACACACGTCTGCTTTCCACCTCCCTATGGGTCTGTCAACATGATTTGCTGCAACCGGGGAGTGCTTAGAGCCAGTGTGGTGTATAGTCGTCCACTGTTACTCCATCCCCCCATATATGTGCGTCTTCTGTATACGAGGGCACGGCAGCATGTCATTAAGGGGGTGAAGGTGGTGTACACTGACGACAGCAGGAAGCGAAGGACCTCAACTGAATTTATAGTCGCAGTCACCCATGAGAGAGGAGAGCTCTGCTGTTATGCCCCCCTCCTCTTTACCCACAATGCATAGAGGTTGATTTAGTGGTGATCTTGTCTTTGTAACAAGACCTCCAGGTTTTGTTCAATTATTGATCTACTAAAGGGGTATTAGGTGTGTGTATGTGTGTGCACTATCAATTTGATGTGGCTGGATGATGTGCTCTCTCCCGCTAGCAAAAAATCTCGATGAGTCTTCAAGTTTGTTTGTGTGCTTTTGTGTGTGTCAGTAGCGTTTTGTTTATATCACAGCTCAGCCAGAGCTGTTGAACTTGGTAAAGCCTCAGTTTTCGTCTAATCTCTAACCGTTTCTCCTCCTAATCTCCTCCATATCGCTTTAAAATATGGCATTCTGGGCAAAATTCAAATTGGTCTGATACGTTTCGTGGTCTGCACCGACTCACGCATATCATCCGCTCTGTGCTATCGTGTCTCTGGAGTGGAGCAGACTGTGTGCGTGCTGCGGTGGTTCACGTGACACTAACGTGAATCCACACTTCATTCACCTCAATGAAAAGCATATTTACACTTTCTGAATTGTTCCCTATCCCCTATATAGTGCACTGTGTACCATTCACCATGTAGAAAATAGTAAATGTGTGACCGATTTTAGCCGCAGCTTCAGCGTCTATTTATAATGTAGGGGGCAGGACGCGATACATTATAGAGAGCATTTGATTGGACAGAAAATCTAATGAAAAGCTGAAGTGCAGCGTGATCCATATTGGCAGAAATGAGAGACTAAGTTTTGAATGCTAATATCTTCTAAATATGAATTTTGTCATTGTTTTGGAGCACATATTCATTATTCAGTATTCAAAGGCAAAAAACGTCAATTTTGATTTCATGGCGACTTTAAACTTTTGTGGATTTTTAAGTTTTAATATTTGTATCCTTAATATTTCTATTAATATTTTATTAACTGTTTTTGTTTTAGCTTTATTACATTTTGTCTTAATATTTATTGTCATATTTAGTATAAACAACTGATTAGGCTATTTTTTGTGTGCATTTTATTTGAATTTAACTTCAATAATTGTATAATAATAATAAAAATAATGTTTTTAGTGCCAACAACTTTTGATTATTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17083 True 5449 lncRNA 0.36 2 4100122 4133524

Neighbor

gene id symbol gene type direction distance location
CI01000001_03983212_04011240 NA coding upstream 88526 3983128 ~ 4011596 (+)
CI01000001_03867875_03890850 NA coding upstream 209133 3867840 ~ 3890989 (+)
CI01000001_03865986_03866675 NA coding upstream 232970 3865357 ~ 3867469 (+)
CI01000001_03830254_03833027 NA coding upstream 267095 3830254 ~ 3833027 (+)
CI01000001_03821989_03823336 SLC48A1A coding upstream 276538 3821989 ~ 3823584 (+)
CI01000001_04296723_04300348 NA coding downstream 163077 4296601 ~ 4300975 (+)
CI01000001_04311013_04315588 NA coding downstream 177489 4311013 ~ 4315765 (+)
CI01000001_04328211_04330988 NA coding downstream 194052 4327576 ~ 4331052 (+)
CI01000001_04369131_04373697 SNPHB, SNPH coding downstream 235607 4369131 ~ 4373972 (+)
CI01000001_04422037_04431229 NA coding downstream 288513 4422037 ~ 4432602 (+)
G15298 NA non-coding upstream 59369 4040302 ~ 4040753 (+)
G15245 NA non-coding upstream 118468 3981451 ~ 3981654 (+)
G15239 NA non-coding upstream 122271 3977041 ~ 3977851 (+)
G15225 NA non-coding upstream 147205 3952372 ~ 3952917 (+)
G15208 NA non-coding upstream 160442 3938659 ~ 3939680 (+)
G15288 NA non-coding downstream 107027 4240551 ~ 4273985 (+)
G15338 NA non-coding downstream 210364 4343888 ~ 4348581 (+)
G15360 NA non-coding downstream 222692 4356216 ~ 4356616 (+)
G15370 NA non-coding downstream 348314 4481838 ~ 4486799 (+)
CI01000001_03618075_03620436 NA other upstream 478671 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2429118 1667762 ~ 1671167 (+)
G13051 NA other upstream 3054970 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3608065 483853 ~ 488825 (+)
G12614 NA other upstream 3789181 309144 ~ 310941 (+)
G15794 NA other downstream 927694 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1153225 5279837 ~ 5287698 (+)
G15995 NA other downstream 1578361 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3399048 7531541 ~ 7540586 (+)
G17234 NA other downstream 3898600 8032124 ~ 8032483 (+)

Expression


Co-expression Network