LOC122328175 (LOC107751494,LOC107739353)


Basic Information

Item Value
gene id LOC122328175
gene name LOC107751494,LOC107739353
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6874459 ~ 6880468 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223881.1
GAGAGCAAACGCCACAACTGTTTGCTGGAACTTCATTGCACGTCTGCAAAGTGTAGTTACTCatccaaaacatttcattaatgcTTCAAAACTTAGATATCAGTAATTCGGCCAAGGCCACCAAAAcataaagtgtttttgtcattgtgtgaCCCACActggtcaaaatgtttagtGGAACTGTGGAAATGAAGGTTATCTAAAAGTAGATATTTGttgaaaacagaacagaaaaagaacatttgtattcatgcattacatttatttttgtacgaATGTATTACATGTAAAGTGAAATCCTGCCTGTCCgattactgtacatttcatattttttatgttcccacaaatacacaaaaacaggTCATTTGCCAATTTAGCAGACATTACAAAAAATGGCGATGTcaatgaacaatgaaaaatgGACGCGAAGTTGTGAAGAGAAACTAATTGTACAGAGATCTGAACttatttagagagaaaaaaaaagcatctgagAATTGAGCCAAAGCAATTGCAAATATGATAAGTGtaaccattaaaacatttacataacaaTAATTTCTTCtgcgttatttatttaatgtgaaaagTCAATGCTAGATACTTTACGAAGCCAAATCCGGCGAACGGCTCAACAGTTCCTTTGATACAAGGCTCTTTTTAGGTCAGAGCTGTAGTTTATATCAGAGGTCCTGGATGAAACTCAACCCTCCTTCCGCAGATACCTGCACGGATACATGATCTGAGGGGTTCGGGTGAACAGAGGCGGCCCACCTGAAGGAATGGGGAGGACGAGTTACGCGAATCTCCCCAAGACCGGATCCATACCCGAAAGTCTGCCCCTGTACAATAGCGTTTCCCTCCCGGCTGCAAACACACAGCGTCTGCTGCACAGACACATGAACACGCTCCCCACCTGCGGCTGCTCCTCCGATGACAGACGCCGCACTCAAAAGCTCCAGGATGCATCTGTTATTCATGCTTCCATTGGTGCTCAAGGTCCAGTCCATCTCCACGAGCCACAACATCACCTCTACGACTGCACCTGCCACGAGGAGCTCAAAATCAGCAACTGCACCAGCAGCAATTTTACTCACGTGCCCGCCGCTCTCCCACCCTTCACCGAACAGCTGGACCTGTCCCTCAACCACCTCAGCGCCATCCGTCCCCGAGCCTTCCACAGCACACGAAGACTTCGCATCCTGCTCCTCAATGACAACGTGATCGCTGCTCTGGCCAACGGGGCGTTCTCTCTTCTGGAAGGACTCTTGAGGTTGGACCTGAGAAACCGAATCTCATTCCTGGGCGAAGGATTTTCCCAGGGTCTCAGTTCCCTTCGAGATCTGTCACTGGCGGAGAACCGATTGACCAGCTTGGACAGCAGCTGTTTCGTCCACTTTGACTCCCTCCAAAGACTAAACCTCAGCCATAATGCAATCGAGACCATCAAGATGAGGGCGTTTGGGTCCATGAGTACCCTACGCCAGCTACAACTCAACTCCAACAATTTAACGGTTCTCAATAACGGCATCTTCTCCATGCTACGAAACCTTGAAGTCTTGAATTTACATCACAATCAGATACACTACTTGGGCGTCCGGGCGCTTTCTCCATTGACCAGCCTCGCGTTACTGGACCTCACCAACAACAACCTCTCCACGATTCAGTTCAAGACCTTCCTGAGTCTCAACACGTACAGCACTCACATAATGCTCCGAAACCCGTGGAATTGCGACTGCGATCTGCAGCGAGTCTTTCAGAAGCTCTGTAACGTCAAGCGGCTCTTCCTGGACGACTACGACAACCTCACTTGCGTGAATTTGGACGAAAGTCAAAGGAACTAGATGAAAGAGGAGTTCTGCGTGGCAGAGATGGTTACCGTCCTGGTCATCACCATCACGGTGGTCATCACTGTTGTGGCTGCCATAGTCATGgcggagaagaaaaggaaaaaaagaacaaagaaaagcaTTGGACGGAAGTGGGCGAGTTGTCGTATGCGCATCGCAAGACTGAACCAGATAATGCGGATAATGCAAGGAAGGAACATTAATCTTGCATTGTATGGATGA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223881.1 True 2072 mRNA 0.46 8 6874459 6880468

Neighbor

gene id symbol gene type direction distance location
cnot9 rqcd1,cnot9,LOC107586962,LOC107687874,LOC107600965,LOC107653560 coding downstream 77374 6791674 ~ 6797085 (-)
plcd4a plcd4a,LOC107739328,LOC107600964,LOC107687884,LOC107586990,LOC103363317 coding downstream 84930 6775322 ~ 6789529 (-)
slx9 LOC107687875,LOC107754253,LOC107739358,LOC107586963 coding downstream 99762 6758285 ~ 6774697 (-)
adarb1a LOC107687876,LOC107586961,LOC107600973,LOC107754241,LOC107653596,LOC107739329 coding downstream 118667 6729782 ~ 6755792 (-)
zranb3 zranb3,LOC107687885,LOC107663643,LOC107710929 coding downstream 296032 6524786 ~ 6578427 (-)
LOC122327117 LOC107570603,LOC107690762 coding upstream 46496 6926964 ~ 6929270 (-)
LOC122328177 NA coding upstream 48682 6929150 ~ 6934573 (-)
LOC122327116 nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250 coding upstream 82046 6962514 ~ 6971960 (-)
LOC122327115 LOC107687869,LOC107739325,LOC107653600,LOC107600976,LOC107754251 coding upstream 106097 6986565 ~ 6994634 (-)
LOC122327118 LOC107751494,LOC107739353,LOC107653563,LOC107600951 coding upstream 117440 6997908 ~ 7002547 (-)
G150472 NA non-coding downstream 69019 6799163 ~ 6805440 (-)
G150456 NA non-coding downstream 264831 6607789 ~ 6609628 (-)
G150442 NA non-coding downstream 267905 6603055 ~ 6606554 (-)
G150453 NA non-coding downstream 274926 6597904 ~ 6599533 (-)
G150325 NA non-coding downstream 487692 6384156 ~ 6386767 (-)
G150488 NA non-coding upstream 6081 6886549 ~ 6887136 (-)
G150490 LOC107739322,LOC107653601,LOC107586968,LOC107687868,LOC107751479 non-coding upstream 18775 6899243 ~ 6902815 (-)
G150494 NA non-coding upstream 59150 6939618 ~ 6940626 (-)
G150503 NA non-coding upstream 122492 7002960 ~ 7004118 (-)
G150538 NA non-coding upstream 124588 7005056 ~ 7005447 (-)
mfsd6a mfsd6a,LOC107687869,LOC107739325,LOC107600976,LOC107653600,LOC107754251,LOC105022531 other downstream 1259 6865223 ~ 6873200 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other downstream 145769 6714794 ~ 6728690 (-)
G150440 r3hdm1,LOC107739334 other downstream 215107 6515565 ~ 6659352 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other downstream 588879 6282456 ~ 6285580 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other downstream 637594 6236252 ~ 6236865 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other upstream 25532 6906000 ~ 6913558 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other upstream 140286 7020754 ~ 7055562 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other upstream 729388 7609856 ~ 7618398 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 1405904 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 1719882 8600350 ~ 8612744 (-)

Expression


Co-expression Network