LOC122328182 (patj,LOC107669802,LOC107731530,LOC107715056,LOC107653652,LOC107588105)


Basic Information

Item Value
gene id LOC122328182
gene name patj,LOC107669802,LOC107731530,LOC107715056,LOC107653652,LOC107588105
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8160428 ~ 8166968 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223885.1
ATGTTTGCTTGGTTGCCAGGAGGTTGCAGGGACTTTGGAAACGGCTCTGTGTTATCTGATGATCTGGATGAGGAGCCGGAGCTTATCTTGGATGCTGAGCCACGCTACGCCTCTCCTCTCACCACCATTGAACTCCTGCCTGGCCTGGAGCGAGAGATGGCTgtagatgaagatgatgaagagcAGGAGATGGAGGATCAAGAGAGCCCCAAGGTCGACAGTCTGCCTTCATACTTCAGTGAGAAGTCTCGCCCCTGGGAAGAACCAACACCGTCTTTCAGTTCCAACAGCCCCTATCAGTTCAACACTCAACCTGATACACAAGAACagTTCACAGAAGAGGACATTGAGCTTTGCACAAGCTTCGAGAAGATTCACTTGCAGCTCCCGCAAATTCCCCTCAGTCAGTCGGCCACGTGGATAGAGGCGGCAGACAGCGAGGCAGACTCTGACTCCAGAAACGAAGGCTCAGAACTTACTTTGACTGACACAGACACTGAGTCTGCACAGCGCACTTCCTCTCGCAGCAGGAAGAGAAGAAACCAGGGGGCAGCCGGTTCAGGCAGGGAAGGCAACAGTGATCTGCCTGAAAGAGAGGAGGGAGAAGGTGAGGAGACGCCCGCGTTCAGCCACTGGGGTCCGCCTCGCAGGGTGGAGGTGTTGCCACAGCCGGAGGAGTCTCTGGGTATCAGCATAGTGGGCGGCCGCACGGTTATAAAGAGGCTGAAGAACGGCGAGGAACTAAAGGGCATTTTCATCAAACAGGTGCTGCCAGACAGCCCAGCTGGACGCACGGGTGCCCTTAAAACAGGAGACAAGATCTTACAGGTTTGTGGAGTGGATTTGCAGAACGCCAGCCATGAGGAGGCAGTGCAGGCTATCAAAGCAGCTTCCAGTCCCGTGGTCTTCATCGTGCAGAGCCTGTCCTCCACTCCACGGCCTGTTTCAGTGATGGCCTCCAGCATTAGACAGCACAAGGCTAAGAGGAAAGTCGCCCAGGTGAGTTGCAAGCCCGCGCTCTGCACAAGCTCACCCTTGAGTTGTGACTCTTTAACCTTCAGCTCTGGGCTTCTCAACCCAAATCCTGCGGGAATATACATATCCTGACAGATGCAGCTGGAG

Function

symbol description
patj Predicted to be involved in microtubule organizing center organization; regulation of microtubule cytoskeleton organization; and tight junction assembly. Predicted to be active in several cellular components, including apical part of cell; bicellular tight junction; and plasma membrane. Orthologous to human PATJ (PATJ crumbs cell polarity complex component).

NR:

description
PREDICTED: inaD-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223885.1 True 1122 mRNA 0.55 9 8160428 8166968

Neighbor

gene id symbol gene type direction distance location
mfng LOC107561915,LOC107715074,LOC107653613,LOC107757470,LOC107665528,LOC107600994 coding downstream 63986 8083440 ~ 8096442 (-)
elfn2a elfn2,LOC107665513,LOC107715073,LOC107757469,LOC107600993,LOC107653611,LOC107561914,LOC103909578 coding downstream 94738 7970345 ~ 8065690 (-)
lrp1ba lrp1ba,LOC107757468,LOC107653541 coding downstream 270543 7661788 ~ 7889885 (-)
si:dkeyp-122a9.2 NA coding downstream 498697 7659333 ~ 7661731 (-)
LOC122328180 NA coding downstream 528727 7629947 ~ 7631701 (-)
LOC122327250 mfng,LOC107561915,LOC107665528,LOC107715074,LOC107757470,LOC107653613,LOC107600994 coding upstream 33049 8200017 ~ 8213383 (-)
rpp21 rpp21,LOC107715079,LOC107653575,LOC107665527,LOC107588084,LOC107757466 coding upstream 138696 8305664 ~ 8308413 (-)
ankmy1 ankmy1,LOC107715050 coding upstream 208324 8375292 ~ 8390135 (-)
hsh2d hsh2d,LOC107715081,LOC107665516,LOC107561903,LOC107757473,LOC107653616 coding upstream 224281 8391249 ~ 8394587 (-)
tpm4a tpm4,tpm4a,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617,LOC103036175,LOC108424981,LOC106929302 coding upstream 227760 8394728 ~ 8407532 (-)
G150735 NA non-coding downstream 94317 8065832 ~ 8066111 (-)
LOC122327072 NA non-coding downstream 208364 7900588 ~ 7952064 (-)
G150706 NA non-coding downstream 293526 7858323 ~ 7866902 (-)
LOC122328071 NA non-coding downstream 508254 7647111 ~ 7652174 (-)
LOC122327778 NA non-coding downstream 531577 7624699 ~ 7628851 (-)
G150785 LOC107715078,LOC107665520,LOC107561911,LOC107715077 non-coding upstream 60064 8227032 ~ 8273171 (-)
G151017 NA non-coding upstream 242348 8409316 ~ 8410129 (-)
G151020 NA non-coding upstream 245475 8412443 ~ 8412693 (-)
G151016 LOC107715086 non-coding upstream 252666 8419634 ~ 8420740 (-)
G151015 NA non-coding upstream 301503 8468471 ~ 8469252 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 542030 7609856 ~ 7618398 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 1104866 7020754 ~ 7055562 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 1246870 6906000 ~ 6913558 (-)
nab1a nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950 other downstream 1270771 6846890 ~ 6889657 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 119404 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 433382 8600350 ~ 8612744 (-)
G151107 tal1,LOC107669848 other upstream 717153 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 846580 9013548 ~ 9171931 (-)
gpx4a gpx4a,LOC108429535 other upstream 1331701 9498669 ~ 9503006 (-)

Expression


Co-expression Network