LOC122328188 (ncan,ncanb,LOC107728538,LOC107687726,LOC107554802,LOC107719650,LOC107599474,LOC107097932)


Basic Information

Item Value
gene id LOC122328188
gene name ncan,ncanb,LOC107728538,LOC107687726,LOC107554802,LOC107719650,LOC107599474,LOC107097932
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9730641 ~ 9788375 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223897.1
ATGGTAGAGATGCCTCAGTCAGGATGCTGGGGAGCTCCGCTGACTGCGCTCCAGTCTCTCCTGGCTATGTGTCTGCTCTTCACCCTAGAACATGGCCTGGTGAGCTGTGATACTGTGGTGAACATGCGTAAGGTGACTCACCAGCGGGTTCAGGAGCCTCTGTCCGGTGCGGCCCTCCTGCCGTGTGTTTTCACCCTGCGTCCGAGCGCTTCGCACGAACCCCCCCGCATCAAGTGGACCAAACTGTGGGGTCAGCGCGGCCCGGATGGTCTGCAGAAGGAGCAGTCCATTCTGGTGGCCAAAGACAACATAATCAAGGTGAAGAAAGCCTTCCAGGGCCGAGTGACCTTGCCGGGATACCCGGAGAACCGCTACAACGCCAGCTTGGTGCTGACAGGCCTGAGATCCAGCGACTCGGGGATGTACCGCTGTGAGGTCGTGGTCGGCATTAACGACGAACAAGACACGGTGCCCCTTCAGGTCACAGGAGTGGTCTTTCACTACCGTGCTCCTCACGACCGCTATGCTCTGTCCTTCACTGACGCCAAAAGAGTTTGTCTGGAGAACTCTGCTAATATCGCCACCCCAGCCCAGCTGCAGGCCACTTTTGATGACGGCTATGACAACTGCGATGCTGGTTGGCTGTCGGACCAGACTGTGAGGTATCCCATCCAGTCGCCCCGACCCGGCTGCTTTGGCGACAGGGAAGACTCACCTGGCGTGAGGAACTACGGCAACCGAGAACCCGACGAGATGTTCGATGTGTACTGCTTTGCCAATGGCCTGCAAGGTGAAGTGTTTCACACCAGCGTGCCAGAGAAGTTGAGCCTGGCGTCTGCCTCCACTCACTGCCACACTCTGGGAGCTCAACTGGCCACAGCCGGGCAACTCTATCTGGCCTGGCAGGGTGGCCTGGACCGCTGTGACCCCGGCTGGCTGGCTGACGGCAGCGTGCGTTACCCCATCAACCTTCCCCGGCGTAACTGTGGAGGAGATGAACCAGGAGTACGGACTGTTTACCATAACCCCAACCGCACCGGGTTTCCAGACACTAGCGACCTCTTTGACGCCTACTGCTATCAAGAGAAGAATTTTGAAGAGCAGACGGCAATACTCTATAAAACCCTAGAAAACTCCAATTCGAGCTCTTCAAGCAATGAAGAGGTGCTGCTTCAAAGAAATGGAGCCTACCCTGAGCCTTCAACTTGGACCGGTCTGGTCGATCTTGAGAAAGAAGACTTCAAGTCCATCATAAACAATGAATCTTCAGAAATTTCAGAGGAGCATGTTGTAATCCATCTTGGACCTGAAGAAAAGTCTGAAGAGTGGGAAGACGATGCTGTGGAGAAGCAGGAGAACCTTCAAGGGGGTTCAGCAAAAGAGGAGACAGATGATTCCGATGTGTCTCCTGACCCGTCTTCAACCACGCCATCCTCCTCTACGCAAGCTCAGACCAGCAACAGCGTCATCTCCAACTTTGTCAACACAATCATGAAGCCGTTTAGGTACTGGACAGGGACTAGAGAACCTGAGATACCGGCCACAGAGTCCAGCCTCTACAGAGGAACATCAGAAATGGTCCCAAATGCCAGGACCAAGCCAAGTAGAGGGAAAACAAGCAAAGTTGGTGTTGATAATGCTATCATGGAGCCTAATACCAAGGAACATTCATATAATCCCTCCTCATCAGATCCAGAAGAAGAGCTCTTGGAGCAGGAGAAGGAAGTGGGCTTGGTGGATGCGCAGAAGGAGATAAAGAGTCAAAGCAATTCTTACATGGATCATGCATATTTACAGACCTTCACTGGACCAAACAAAGGAGCGATTGGATCTGGAACGGCGAATCCGACTCTTTCTTCGGCGTCTAGGAGCTTTAGTTCCATGAGGAGCAGCCAACAAATTTGGCCGCTAAAGTCATTGAAAGTTGTCCCAAGCGATAACAGGCATTTCATAACTCAAACAAGCAGTCCCATGGAAGCCAAACGAGCCAGTTTGGAGATCATGACCATTCCTGTTTCCAGGAATAACCCTGAGAACTTTTCCGGGGAAGGGAATGAGGATGGTTACCCTATTCCCAAAGGTCCCGCATCGCCGTTATCtgcagaggaagaaaaagatggTGAGGGAAGTGCAGGGAAGGAGTTACCGCTCACCCTTGACAGCCAAATAAATGGATCTGATGACCACAGAGTCCCGCTGGAGACCACTGTCAGATGGCAGCTTATGAGTCTCCAGACGACCCAACCTACTATTGCATCCAGTTCTTCTGAACCCAAGCATGAGAAACCAGCCGACACGGTTGAGGAAGCCAGGGGTGAAATCATGTACGTCCATCGCCCCCTTGAAAAGCACAAGAACGGTCCCTCGAATAAAGTCAACGTGCCTTTCGTTAAACGAAAGCAAGACCTAGGGTTGACCActgcaccacaaacacacaattcCAACACGCCTAGTACCCCAAGCCCCAGAGATCCCAACGAAGACAAGCTAGCAATTCAACCTCCAACCGTAGGGGTAACTCCATCCCAACCAGAAGAAACCACTACCGAGGACATTTTGTGTACTCCAGATCCAGCTGTTTCTACCACGTGGTTACCTGTGGTTCAAGAAGAGGTAGATACTCCACAACCACCGGTTCCTACCATAATAACGACACAAGCCGGACCTACGGTTCAGCCCACTGGTGCAGGACCAAAGGACACTTCTCAGCAGGCTGAGTCCAGGTCAGGAGGTTCGGAGTCATTTGTGTTGGCTCAGGGCTGGACAACATCTGAACCGGTTCCAACAGAGGAACCTTCATACCAGACCACAGGAAGCCCAGAGAAAGACACAACTACGACTGGGAGTGAAAACAGCCCAATCAGATCTTCAGCCGAAGATGATCCCTGCCAGACCAACCCGTGCCTGCATGGTGGAAGCTGTTTGACCGAGGGGGAAGGATACAGTTGCCTGTGCCCTCAGGGCTATTCGGGAGAGAGCTGCGAGATCGATATTGATGATTGTCAGTCCAATCCATGTCAGAATGGAGGCACCTGCATTGATGAGATCAACTCTTTCGTATGCTTGTGTCTGCCATAG

Function

symbol description
ncanb Predicted to enable calcium ion binding activity; carbohydrate binding activity; and hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human NCAN (neurocan).
ncan Predicted to enable calcium ion binding activity; carbohydrate binding activity; and hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within regulation of synapse structural plasticity. Predicted to be located in Golgi lumen; extracellular region; and lysosomal lumen. Predicted to be active in extracellular matrix and synapse.

NR:

description
PREDICTED: neurocan core protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223897.1 True 3078 mRNA 0.53 10 9730641 9788375

Neighbor

gene id symbol gene type direction distance location
LOC122328187 ncan,ncanb,LOC107728538,LOC107554802,LOC107687726,LOC107599474,LOC107719650 coding downstream 41501 9686468 ~ 9689140 (-)
LOC122328186 ncan,LOC107687726,LOC107719650,LOC107599474,LOC107728538 coding downstream 48050 9625685 ~ 9682591 (-)
si:ch73-63e15.2 si:ch73-63e15.2,LOC107669818,LOC107592676,LOC107599449,LOC107655177 coding downstream 133135 9555171 ~ 9597506 (-)
tjp3 tjp3,LOC107669831,LOC107719622,LOC107592677,LOC107655241,LOC107728571,LOC107599473 coding downstream 181634 9533382 ~ 9549007 (-)
arhgap45b hmha1b,LOC107669820,LOC107655244,LOC107592722 coding downstream 198509 9506588 ~ 9532132 (-)
rfxank rfxank,LOC107687741,LOC107554808,LOC107728547,LOC107719616,LOC107599486 coding upstream 97798 9886173 ~ 9887859 (-)
tmem221 NA coding upstream 102175 9890550 ~ 9894967 (-)
tmem161a tmem161a,LOC107728546,LOC107599454,LOC107719614,LOC107554814,LOC107687722 coding upstream 125048 9913423 ~ 9918916 (-)
tssk6 tssk6,LOC107687737,LOC107728539,LOC107554804,LOC107599475,LOC107719648 coding upstream 205817 9994192 ~ 9995007 (-)
si:ch211-212d10.2 si:ch211-212d10.2,LOC107728577,LOC107687719,LOC106613739,LOC101487565 coding upstream 255847 10044222 ~ 10047874 (-)
G151319 hapln4,LOC107554801,LOC107728536,LOC107719665,LOC107599484 non-coding downstream 109476 9616790 ~ 9621165 (-)
G151289 NA non-coding downstream 266128 9426153 ~ 9464513 (-)
G151266 NA non-coding downstream 276294 9360531 ~ 9454347 (-)
G151280 NA non-coding downstream 332545 9387145 ~ 9398096 (-)
G151122 NA non-coding downstream 583340 9145305 ~ 9147301 (-)
LOC122327858 NA non-coding upstream 31318 9819693 ~ 9865888 (-)
G151444 NA non-coding upstream 234843 10023218 ~ 10028439 (-)
G151439 NA non-coding upstream 265543 10053918 ~ 10072892 (-)
G151468 LOC107687734,LOC107728578,LOC107719602,LOC107655224,LOC107569929 non-coding upstream 401455 10189830 ~ 10194857 (-)
G151457 NA non-coding upstream 456543 10244918 ~ 10249842 (-)
gpx4a gpx4a,LOC108429535 other downstream 227635 9498669 ~ 9503006 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other downstream 558710 9013548 ~ 9171931 (-)
G151107 tal1,LOC107669848 other downstream 843700 8884121 ~ 8886941 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 1117897 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 1437433 8286372 ~ 8293208 (-)
G151425 NA other upstream 169436 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 493647 10282022 ~ 10321663 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other upstream 630752 10419127 ~ 10422354 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other upstream 1146677 10935052 ~ 10994952 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other upstream 1385768 11174143 ~ 11188692 (-)

Expression


Co-expression Network