vtg8 (LOC107715730)


Basic Information

Item Value
gene id vtg8
gene name LOC107715730
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12270128 ~ 12278886 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223905.1
ATGAGAACTGTTGTCGTGGCCTTGACTATAGCCCTTGTGGCAAGTCAACATGTGAATCTTGTTCCTGAGTTTGCAGGCACTCAGACGTACGTGTACAAATATGAGGCTTTGCTCTTTAGTGGTCTTCCCCAGGAAGGTCTGGCCAGAGCTGGCATTAAGATCAACAGTAAGGTTTCCATCAGTGCTGCGACTGAGAATATTTTCCTTCTTAAGCTTTCAAATCCTCAGCTGTTTGAGTACAGCGGTATCTGGCCCACAGATACATTTGTCGATACTAAACTCACCTCAGAACTGGCTGCTCAGCTTCAGATTCCAATTAAGTTTGAGTACACCAGTGGTGTGGTTGGAAGGATTTTCACACCTTCTGTGGTGCCAACTACTGTTATCAACCTGCACAGGGGAATTCTGAACATCTTTCAGCTCAACCTCAAGAAGACCCAGAACATCTATGAGGTTCAAGAGGATGGAGTTCAGGGCATTTGCAAGACGCAGTATCTGATCAGTGAAGATGAAGGAAACAACCATACCACTATCATCAAGTCTAGAGATCTTACACTTTGCCATGAGAGGATAATGAAGGATGTTGGCTTGACTTACATTGAAAAGTGCATTGAATGTCAACAGAAGGTAAAGAGTCTTTCTGGAGCTGCAACTTACAGCTACATCATGAAGCCAACTCCAGCTGGTGTTATGATTACTGAAGCAACAGTCCAAGAGTATCAACAGTTTACACCTCTATATGAGATCCATGATGCTACCCAGATGGAAACAAGACAAACTTTGACCTTTCTGCACAATACAGTATCTCCCATAATTCCAATCAGTGCTGAATATTTAGCCCGTGGAACTTTACAGTATGAATTTAGCACAGAGGCTTTTTGGAGTCCAATTCAGCCCATGAGAATAAGTAATCCACAGGCTGAAATAGTAGATGCTCTGGATCATCTGGCTACAAAGAAATTGGAAGAAGTCCATGAAGATGTTCTTCTGAAATTTATTCAGCTCATCCAGCTTTTGCGTTTTGCAACCATGGATGCTATTGAAGGAATCTGGTCTCAATTTAAAACCAGACCAAATTTCAGGAAATGGATTTTGGATGCCATTCCTGCAGCTGGCACCTTAGCTGCATTAAAATTCATCAAAAAGGCCTTCTTGGCAGGCAAACTTTCCATACCCGAGTTCACTCAGGTTCTTCTGTCCACTGTGCACATGGTCAATGCTAATTTGGACACCATTAAGATGTACTCTGGTCTGGCTTTGAGTCACAAAGTTCAAGAAACACCTGTTCTACGTAAGGTTGCTATGCTTGGCTATGGAACAATGATTGCCAGGTACTGCAGTAGATCTCTTGAATGCCCAGTGGATCTTTTGAAGCCATTCCATGAGACTATTCCTGAGGCGACTGCTAAGGCTGACATTGCAGAGATCATCTTAATTCTGAAAGTACTGGGCAACGCTGGTCACCCTGCTAGCATTAAATACATCACAAAGTTTCTACCAGTATTTGGGAACCATATACATCTGTTTCCAACCAGAGTTCAAGTGGGTGCGGTTTTGGCTCTAAAGGCTATTGCCAAAAAGGAACCCAAACTGATCCAGAATATAGTTCTGCAGATTTTTGTAAACAAAGATCTCCACCCAGAGCTGCGTATGGTTTCATGGATTGTGCTTTTTGAGACAAAACCAAGCATGGGCCTGGTTATTACTCTTGCACGTGCTCTACTAAAGGAACCTAATCTACAGGTGGCCAGTCTTGGGTACTCACACATGAAAGCCTTGACAAGGAGCACACACCCTGAGTTTTCTCTAATTGCCTCGGCCTCCAGGGTTGTCATCAAGATATTAAGCCCAAAACTGGACAAACTTAGCTTTCGTTACAGCAAAGCATTTCTCTTGGATGGTTATGAAGTTCCGCTTATGGTTGGAGCTGCTGGTAGTGTCTTCATCATTAATGATGCTGCCACCATCCTGCCCAGAGCAGTTGTAGCTAAAACACGTGCTTACTTGGCTGGAGCTGCTGCTGATGTTCTTGAGGTTGGCATTAGATCTGACGGAATTCAAGAGGCTCTTCTGAAATCTCAGTTTCTGAATGAGGACAGGCTGCCAAGGATGAAACAAATTCTTAAAGCTcttaaaacatttaaatcccTGCCAAAAAAGCTGCCTCTGGGCTCGATCTATGTGAAAGCTTTCGGACAAGAGATTGCTTTTGCAGTTGTCAACAATACAGTTATTGAACAGGTAATACAGATTGCTTCTGGAGGCTATATACCTAAGCTGGCAGGGGAAGCTCTTAAAGCAATGCAGAATGGCATTGCCTTCCAGTATGCCAAACCCCTGCTGGTGACAGAGGTGCGTCGCATTTTTCCATCAGTAGCTGGTGTACCTATGGAGTTTAGTTTGTACACTGCTGCAGTGGCTGCTGCTAATTTGAAGGTCCAAGCTCTTATTACACCACCTTTAACTGAAACCATCAGTGTTGCTCATCTGATGAAGACAGACGTTAAGTTAACCGCTGAAGTTTCACCAAGCATTGCCTTACAGATGTTTGCTGTAATGGGACTGAATACTGGTTTTGTTCAAGCTGCATCTATGGCCAAAGGAAAGATCCATACATTTTTGCCTCTAAAAATGGAGGCAAAGTTTGACATCACAAAAACGAATTTCAAGATAAAGACTTTTCCTGTCATACTTCCAGTGCATGCTTTAACAGCACGTTTTGAAACTTTGGCAGCAGCTGGCAATATCAAAGAGGCCAACGTGGAGAGAGTTACGCCAATGGTACCAGAGACGGTAGTTGTGAAACATTCCCAAGAAACAATTGCTTCTTCACAAGGAGATTTGTCATTTGAAACCACCGAAGCTGCTATGGCATCTGCTGAGGAACCTGAACTAAAGACTAGCGCTCCAGTTCACAGAACTCTTTGTTCTGTTGTACCTCACATTGGATTTAATGTATGCATGGAGGTTTTGTCCTGTGATGCCACCTTCATAAAAAACTCCACCCTTTATAACATGATCGGACAGCATGGAGTACATATTAACGTAGTTCGAGcTGATGGTCCTGCTGTTGAGGGATTAGAGCTAGAGGTCCAACTAGGTCCAAGAGCTGCCAAAAAACTCCTTAAAGAAATCAGCTTTCCCGACCTGAACACTCCCAAGACCATCAACAACAGCGTCAAAGATGtaggagacagagacagaatcATAAACAAGCAGGCAGCAGGGTCCAGGCAAAGAGTCAAAAGCCAGACggcaaacaaagaaacattagACAGACCAGAATCAACATGGGGAATCTGTCGTGGGGAAATCTCCAGTGGACAAAGCAGTGAAAGTTTCAAGCCCGTTCAGCAGTCTAGGTTCCTTGGAGACTTGGTTCCTCCAGTGGTTTCTATCATTGCACGTGTTGTGAGAGTTGATCGCAAGTTGTTGGGGTACCAGCTCACTGCTTACCTAGACAAGCCCACATCAAGGGTTCAGATCATTCTGGTCTCCATTGCAGTGAAGGACAACTGGAAGATGTGCGTTGATGGTGCCTTGTTGAGCAAGCACAATGCTGggGCAAGGATTGCATGGGGTGCAGAGTGCCAACAATATGCAATTACTATCAGTGCGGATACTGGCCACCAAGGTTCAAGTGTTAAAGTCAAGTGTGAGAAGTTGTCCCCAATTATCACGACCTATGCCAAGAGGGTGGCTGAATATATTCCTGATGCAGCTCAAATTACTGGATTGGCTATAaactatgaaaaaaatactgacagGCAGATTGAACTGATCATACTTGTTCCAACAGAAAGGACCCTGGACATCATTATTAAGACCCCAAAAATGACTTTGTCAATGTCGAAAGTGGTTCTTCCAATTGCTTTGCCATTTGAGGGTATACAGGCCTATCCAGAAAATGATGTCACAAACATAATTCGAAACCTTTATATAGAGGGTAGTTCAGTTAAATGCAGTAGGATCAGAAACACTTTGACTACATTCAACCATAACAAGTACAACTATGAAGTTCCTCTTTCCTGCTACCTAGTCGTAGCTCAAGACTGCACTTCAGAGTATAAATTCACAGTCCTAATGAAAAAGGACAATGTCTTTGAGAATGAAGACCTAACCATTAAGGTGGCAGACATTGATGTTGACATGTACCACCAGAAGAGTGCAGTGAAAGTTAAAATCAATGGAATTGAAATACCAACCAACAACATTTCGTACCAACACCAAACAGGTACCATACGAATTAAGCAGAAAGGTCAAGGTATCGCTCTCTATGCCCCAGGTCATGGTCTTCAAGAGGTCTATTATGCCAGTGACCAGTGGATGGTTTATGTTGTGGACTGGATGAAGGGGCAGACGTGTGGACTCTGTGGAAAAGCTGATGGGGAAATCAGACAGGAGTTTCGCACACCCAGCGGACACCTGACCAAAAATTCAGTCAGCTTTGCTCACTCATGGGTGCTTACTGCTGAGAGCTGCCATGATGCCAGTCAGTGTCGCATGAGGCTTAAAACTGTGAAATTGGAGAAGCAAAGATCAGATAGGCAGTCATCCAAATGCTACTCTGTTGAGCCTGTGTTGCGCTGTCTGCCTGGCTGTCTGCCAAACAGGACTAGTCATATCACCGTTGGATACTACTGCCTGCCTTCTAACTTCAAACAGAACCTTTCTGCAAATCAGAGCAAAACTGAAGATCTGATGGAAGCTGCTGAAACTCACATCGCCTGTCACTGTACAGAGGAGTGTGTTTAA

Function

NR:

description
PREDICTED: vitellogenin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223905.1 True 4755 mRNA 0.44 33 12270128 12278886

Neighbor

gene id symbol gene type direction distance location
LOC122327050 LOC107570370,LOC107664859,LOC107741528,LOC107664867,LOC107570371 coding downstream 2107 12260109 ~ 12268021 (-)
LOC122327080 LOC107655402,LOC107664867,LOC107570371,LOC107664873,LOC107570369,LOC107563524 coding downstream 15382 12248179 ~ 12254746 (-)
LOC122327083 LOC107664867,LOC107570369,LOC107655402,LOC107570371,LOC107664873,LOC107563524 coding downstream 40027 12223487 ~ 12230101 (-)
LOC122327878 LOC107664873,LOC107570371,LOC107664867,LOC107570369,LOC107563524,LOC107655402 coding downstream 63497 12200000 ~ 12206631 (-)
uts2d NA coding downstream 214732 12054271 ~ 12055396 (-)
LOC122327114 NA coding upstream 21121 12300007 ~ 12307611 (-)
LOC122327888 NA coding upstream 30057 12308943 ~ 12311833 (-)
LOC122327886 NA coding upstream 47226 12326112 ~ 12332257 (-)
LOC122327889 NA coding upstream 55392 12334278 ~ 12337674 (-)
fam20cl fam20cl,LOC107741571,LOC107664989,LOC107570372 coding upstream 61889 12340775 ~ 12345796 (-)
LOC122327175 NA non-coding downstream 183214 12083507 ~ 12086914 (-)
LOC122327264 NA non-coding downstream 190011 12076741 ~ 12080117 (-)
G152234 NA non-coding downstream 243333 12026112 ~ 12026795 (-)
LOC122327268 NA non-coding downstream 273083 11993123 ~ 11997045 (-)
G152223 NA non-coding downstream 277095 11992713 ~ 11993033 (-)
G152300 NA non-coding upstream 12030 12290916 ~ 12291260 (-)
G152332 LOC107716433,LOC107659337,LOC107575798 non-coding upstream 131714 12410600 ~ 12419443 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding upstream 139472 12418358 ~ 12426088 (-)
G152339 NA non-coding upstream 147870 12426756 ~ 12426972 (-)
G152340 NA non-coding upstream 155695 12434581 ~ 12434956 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 124553 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 220590 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 424986 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 465430 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 779474 11465852 ~ 11490654 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 78797 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 281957 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 627247 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 919148 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 1100803 13379689 ~ 13409999 (-)

Expression


Co-expression Network