rgmd (LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903)


Basic Information

Item Value
gene id rgmd
gene name LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10457205 ~ 10463197 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223909.1
GGCTCTCATGGAAAGGGCCGGCGAACAGTTCACGGTAGCTCCTCCCATATGCGATGGGTTTCAGCACTTTTGCTTTGAATGACAGTGGCCGGGGAAGGGAATGAAAAAGTTGTGTGATTTCTCGCAGCCTCAACGCCGACGAGCAGCAGTTGGAGAACTGCAATCGAACTGAATGGATTGGCATGGGGAGAAGCGGCACTCTCAACCTGGCTAAGCGGCAGCTTTGGAACTGGATTTGTCTTTCGGTGCTTTCTATGTGCCTCTTACTCCGACCAGTGTGCTGCCAAAAATGTCGAATTCAGCGCTGTAATGCGGAGTACGTGGCCTCATTCTCACCCTCCGGTGGCTTGCAGGAGGAGGCGCTTCCAGATGTGGACTACTGCATTGCACTGAGGGCCTACTCGTTGTGTACGCGTCGCACAGCTCATGGCTGTAGAGGAGACTTGGTGTACCACTCCGCTGTGTTCCGTATTAAAGAGCTCTTTGCACAGCACAACTGCTCCAGCGATGGCCCAACGTCGTCAGCCAAAGCATCCAGCACTTCCAAGCCACCAGTGGTGGACGTCTGCAACTATGAAAGCAGGGTGCTCGCCTCGGGCCCGGCGGCCCAACAGAAAAAGTACGGACACTGTGGATTATTTGGTGATCCTCATTTGCGGACTTTTCGGGATGAGTTCCAGACATGTAGGGTTGAAGGAGCCTGGCCGCTCATCCACAACCGATACCTTTCGGTTCAAGTCACAAACGTACCTGTGGTTGAAGGCTCCAGTGCTACAGCAACCAATAAGATAACCGTCATCTTCAAGTCCTACCATGACTGCACCGAGCAGAAGGTGTACCAGGCCACCACCGAGGACCTGCCGTCTGCGTTCCAGGACGGCACGAGAAGCGGCGGGAAAGGAGAGAGCCTGTGGATCGTGGAGGGTAGTGGAGGTCTAGGTATACGGCAAGTGAAGATCCACGCTCGCTATCTAGGCACGTCCATCATTGTGCGACAGGTCGGACGCTACCTGACTTTCGCCATCCGCATGCCTGAGGACTTGGCCGAGGAGAACGGCGGCCTGCAGCTGTGTCTTCACGGCTGCCCGCGCAGCGAGGTCATCAAAGCCCATGTTCTCAACCGGCAGCAAAACCGGCTCCTGGGCAGCTGGTACGGGGAGGACGACGGCGCCGAGCTGCAGCCGGGCCTCTCAGCACACGTGGACATGTTGGAACGTGCGACCACCAAGTGTCGAGAGATGCTGCAGGTGGAGGACGTTTATTTCCAGTCGTGCGTGTTTGATCTTCTCACGACGGGAGATCCGGAGTTCTCCATGGCTGCGTATGGTGCCCTGGAGGACCTTAAGGCACTTCCGCCAAGCACTCTGAAGCAGAGTTCACCCAGGACTCCACACATTTATAGCAGAGGAACAATAGTTACACCTTCTGTTTTCGCAGCTCTGGTTCTTGTGCTGCTGTTGAACTGAAGGAGCTGGTCTAGACGCCAGCTCGAGGATGGATACCCACCAGCCAGACTGTTCTTCAACCGTGAAAACCCTCCTGGAAAAACAATCAAACTGACTTCAAACGAATGAGAGACttgtttcatttaaagattCAGTGTTTTACTCTTCAAACGGATAATGGCAGAACATTTTCCGAATGTGAACGGCTCAAATCTGGAAACGATGAAGGCAGCTAATCTGCATATTTtgtaggtttttgttttttttgttttaatcgcAGATTAAAGAATGGAAACTCTGCTACAGATGTGACGTTATTGGATGAAATTATTGTATAAAACACACGGGATGTCCTGAATCACACAAGTTTAGGTGCACTTCGAGCTTCGTACTCTGAGAAAATATGTTATCTACACGGGATCCAACAACTACATGAAATGCTACCTATCCATATATTTTTGGGTCTGGGTCCACACAACCACACGTTAAGCTACAGTCATGGTAGGAAAAGACTTCTTCGAGCTGCTCTGCTTATTaaggagaaaacaaaacaaattctttatataataatatattgaaagagtgtatatatgtgtacattaaCTTGTGTAtagatgttttaaatgtgatgttttgaaGCAGTCTCATctagttagatttttttagtttgtatAAAACAACTAATATTTGCTGTATTGTGTAATCTGTTgttttccatattaaaaaaaatgagttgTGAC

Function

NR:

description
PREDICTED: RGM domain family member B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223909.1 True 2185 mRNA 0.49 3 10457205 10463197

Neighbor

gene id symbol gene type direction distance location
hsd11b1la hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913 coding upstream 30898 10422888 ~ 10426307 (+)
LOC122328195 LOC107726533,LOC107596895 coding upstream 38989 10413349 ~ 10418216 (+)
LOC122328194 NA coding upstream 44751 10410257 ~ 10412454 (+)
LOC122327820 LOC107675898,LOC107726531 coding upstream 48722 10407145 ~ 10408483 (+)
LOC122327821 LOC107726539,LOC107728585,LOC107675904 coding upstream 55478 10400426 ~ 10401727 (+)
hmg20b hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902 coding downstream 253043 10716240 ~ 10720317 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding downstream 257903 10721100 ~ 10759871 (+)
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding downstream 392618 10855815 ~ 10857119 (+)
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding downstream 460551 10923748 ~ 10930951 (+)
crlf1b crlf1b,LOC107729674,LOC107676985,LOC107719637 coding downstream 713311 11176508 ~ 11185087 (+)
G151516 NA non-coding upstream 36169 10388550 ~ 10421036 (+)
G151487 NA non-coding upstream 108319 10347829 ~ 10348886 (+)
G151382 NA non-coding upstream 268033 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 269622 10185635 ~ 10187583 (+)
G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding upstream 294759 10151480 ~ 10162446 (+)
G151592 NA non-coding downstream 202859 10666056 ~ 10669212 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding downstream 238425 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding downstream 245847 10709044 ~ 10709110 (+)
G151603 NA non-coding downstream 247316 10710513 ~ 10711972 (+)
G151624 mbd3,LOC108427158 non-coding downstream 314530 10777727 ~ 10840314 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 463764 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 493571 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 546412 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 563698 9888163 ~ 9893507 (+)
G151232 NA other upstream 877054 9577679 ~ 9580151 (+)
G151620 NA other downstream 342855 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 411231 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 454892 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 471838 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 854910 11318107 ~ 11328230 (+)

Expression


Co-expression Network