si:ch211-117l17.5 (LOC107655356,LOC107715708,LOC107741540,LOC107564934,LOC107664973)


Basic Information

Item Value
gene id si:ch211-117l17.5
gene name LOC107655356,LOC107715708,LOC107741540,LOC107564934,LOC107664973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12040276 ~ 12043067 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223914.1
CGGATACGCAGAAGGGAAACCTGTAGAGCACCAAGTGCAGCATGATCACTAGCAGGAGCGCACGGCTGTGGATTCCTGGGCAATAAGCCCTCGCTCTACCATGCCTGGCCTAATCCCACAACCTCTCCCAACACATTTCAACATGGACAGAGACGACTGCAGAAGAAACAAGACCTTAGGAAAGAACCTCATGTGCCGACTAAAGTGTATGTTCACCAGTTCATCTGCTCCTGAGAGCAGGCTAAGTTTAGAAGACACCCAACAATGGTCCCAGTCTCTGGAGCGACTCCTCGGTTCCAAATATGGCCTGGCCACATTCCGCACCTTTCTGAAATCGGAGTTCAGCGACGAGAACATCGAATTCTGGCTGACGTGTGAGGACTACAAGAAGATAACGTCGTCCTACAAGATGAGCTCCAAGGCGAGGAAAATCTTCGAACAATTCGTCGAAGCAGAATCTCCGAAAGAGATAAACATCGACTATCACACGAGGGAGGAGATCAAGAGGAAAGTGAAGAGTCCGACGCCGCAGTGTTTCGATGAGGCTCAGAAGATCGTTTACGGACTGATGGAACGCGACTCTTACCCCAGATTTCTACGGTCTGAGATGTACAAGGCCCTTCTTGAGTCCCTCGCGGCAGACAATGCTCAAAGATGACTCTATGGATATATCACACCAAAGCTAAAACTGGAACGGTCTGGTCTTGTGTGCAGGACCAGAGCCCCAAAGCTTGTGCCCCCGCCATGTGGATCAGACCCCAAAAGACCTCTGAGACTAGAAGGAGACCATATGGAGCAATGGTTGGAAACTTGCAATTGATATCAAAGTCCAACATGTTACTGAAGCGCCATGAGTGTTTCTTAACTAAGGGTGCTTCCTGTGTAGATAAGCACCCAGCTCCTTCAAGCCCATCCGGTGGTTTGTGGGCACAACACTATTTTCTTTTCCTGGCACTTCCAAAGGATCTTTAAGAACTGCTTTACCATGTCCTACAATGACTTAAGCAACGAAATGTAACTTCAGCCTATTGGTTGGTTTGGACAATTTTGTGAGAGGAACTTGACATATCCTATTTCGACATCGGTGCCTCATTGCCACACAGATGTATAACATTAAAGAAAGTGTGACTTTATTACCTACTTGAGAGGTCaagttcaaaaataaataacaaaaaaataaatagaaatacatatattatatgaacAGTTGTAGCATGTGTGCCACACACAAAAACTGTAGGCATTACTTGTAATGTTATgaagtttaatttaaacaatgttttttttatttattagccaCAGCCACTGGTTGGATGTTGTTATTTTggtgacaataaaataaagattagaCACTGTTGAA
>XM_043223915.1
GCCGGATACGCAGAAGGGAAACCTGTAGAGCACCAAGTGCAGCATGATCACTAGCAGGAGCGCACGGCTGTGGATTCCTGGGCAATAAGCCCTCGCTCTACCATGCCTGGCCTAATCCCACAACCTCTCCCAACACATTTCAACATGGACAGAGACGACTGCAGAAGAAACAAGACCTTAGGAAAGAACCTCATGTGCCGACTAAAGTGTATGTTCACCAGTTCATCTGCTCCTGAGAGGCTAAGTTTAGAAGACACCCAACAATGGTCCCAGTCTCTGGAGCGACTCCTCGGTTCCAAATATGGCCTGGCCACATTCCGCACCTTTCTGAAATCGGAGTTCAGCGACGAGAACATCGAATTCTGGCTGACGTGTGAGGACTACAAGAAGATAACGTCGTCCTACAAGATGAGCTCCAAGGCGAGGAAAATCTTCGAACAATTCGTCGAAGCAGAATCTCCGAAAGAGATAAACATCGACTATCACACGAGGGAGGAGATCAAGAGGAAAGTGAAGAGTCCGACGCCGCAGTGTTTCGATGAGGCTCAGAAGATCGTTTACGGACTGATGGAACGCGACTCTTACCCCAGATTTCTACGGTCTGAGATGTACAAGGCCCTTCTTGAGTCCCTCGCGGCAGACAATGCTCAAAGATGACTCTATGGATATATCACACCAAAGCTAAAACTGGAACGGTCTGGTCTTGTGTGCAGGACCAGAGCCCCAAAGCTTGTGCCCCCGCCATGTGGATCAGACCCCAAAAGACCTCTGAGACTAGAAGGAGACCATATGGAGCAATGGTTGGAAACTTGCAATTGATATCAAAGTCCAACATGTTACTGAAGCGCCATGAGTGTTTCTTAACTAAGGGTGCTTCCTGTGTAGATAAGCACCCAGCTCCTTCAAGCCCATCCGGTGGTTTGTGGGCACAACACTATTTTCTTTTCCTGGCACTTCCAAAGGATCTTTAAGAACTGCTTTACCATGTCCTACAATGACTTAAGCAACGAAATGTAACTTCAGCCTATTGGTTGGTTTGGACAATTTTGTGAGAGGAACTTGACATATCCTATTTCGACATCGGTGCCTCATTGCCACACAGATGTATAACATTAAAGAAAGTGTGACTTTATTACCTACTTGAGAGGTCaagttcaaaaataaataacaaaaaaataaatagaaatacatatattatatgaacAGTTGTAGCATGTGTGCCACACACAAAAACTGTAGGCATTACTTGTAATGTTATgaagtttaatttaaacaatgttttttttatttattagccaCAGCCACTGGTTGGATGTTGTTATTTTggtgacaataaaataaagattagaCACTGTTGAA

Function

NR:

description
PREDICTED: regulator of G-protein signaling 13-like isoform X1

GO: NA

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223914.1 True 1360 mRNA 0.44 5 12040276 12043065
XM_043223915.1 False 1359 mRNA 0.45 5 12040276 12043067

Neighbor

gene id symbol gene type direction distance location
rgs2 LOC107741538,LOC107564933,LOC107664962,LOC107560697,LOC107735525 coding downstream 7914 12030462 ~ 12032362 (-)
LOC122327835 NA coding downstream 169991 11862795 ~ 11870285 (-)
LOC122327836 NA coding downstream 184599 11845866 ~ 11855677 (-)
LOC122327288 capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344 coding downstream 224698 11804815 ~ 11815578 (-)
LOC122327726 LOC107719667,LOC107699403,LOC107593325,LOC107676991,LOC107717979,LOC107586464,LOC100332608,LOC108270593 coding downstream 468598 11567017 ~ 11571678 (-)
LOC122327260 LOC107664925,LOC107741564,LOC107655340,LOC107715693,LOC107564927,LOC107560680 coding upstream 7612 12050679 ~ 12053495 (-)
uts2d NA coding upstream 11204 12054271 ~ 12055396 (-)
LOC122327878 LOC107664873,LOC107570371,LOC107664867,LOC107570369,LOC107563524,LOC107655402 coding upstream 156933 12200000 ~ 12206631 (-)
LOC122327083 LOC107664867,LOC107570369,LOC107655402,LOC107570371,LOC107664873,LOC107563524 coding upstream 180420 12223487 ~ 12230101 (-)
LOC122327080 LOC107655402,LOC107664867,LOC107570371,LOC107664873,LOC107570369,LOC107563524 coding upstream 205112 12248179 ~ 12254746 (-)
G152234 NA non-coding downstream 13481 12026112 ~ 12026795 (-)
LOC122327268 NA non-coding downstream 43231 11993123 ~ 11997045 (-)
G152223 NA non-coding downstream 47243 11992713 ~ 11993033 (-)
G151919 NA non-coding downstream 450353 11587661 ~ 11589923 (-)
G151904 NA non-coding downstream 489406 11550198 ~ 11550870 (-)
LOC122327264 NA non-coding upstream 33674 12076741 ~ 12080117 (-)
LOC122327175 NA non-coding upstream 40440 12083507 ~ 12086914 (-)
G152300 NA non-coding upstream 247849 12290916 ~ 12291260 (-)
G152332 LOC107716433,LOC107659337,LOC107575798 non-coding upstream 367533 12410600 ~ 12419443 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding upstream 375291 12418358 ~ 12426088 (-)
LOC122327182 NA other downstream 195134 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 235578 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 549622 11465852 ~ 11490654 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other downstream 809027 11229974 ~ 11231249 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other downstream 851584 11174143 ~ 11188692 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other upstream 2402 12045469 ~ 12049538 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other upstream 99775 12142842 ~ 12145575 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 314616 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 517776 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 863066 12906133 ~ 12914243 (-)

Expression


Co-expression Network