LOC122328225 (LOC107716435,LOC107659297,LOC107569129,LOC107715742)


Basic Information

Item Value
gene id LOC122328225
gene name LOC107716435,LOC107659297,LOC107569129,LOC107715742
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12473253 ~ 12478935 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223942.1
GTTGCCATAGATTCGTGACGTGTGTAGTaatttatctatctatttatctatatatatgaaGTTAGTATCACTAAAGAAGGATACGTTTTAGCTGTGGTTTTGTTCACCTGTACATCACAgggacgaaaaaaaaaaaaagagcctttTCAGCTCCACCCCTACAACCAGTTGCTAGGTATGAGAGACAGGTATTTCAGCAGGGAATATACGTGAGGCAGTAAAGTCGTAGCCAAACTTCCCAAAATGGCTACTAAAGACATTTGGCAAAGCTTGGCTCAAGATAATGTTCCATTCATGCGTCACATTAAAAGGACATTTATTCTGCTGCTTACAGTAGCATTGTTATTATCTGCTGTTGCTTATGTCTCTGATTTCTCTTTTGAGACAATTGCATTCTCTCAAACCTGGTTGATTAAAATGATGAATCAGACTCATAATAAGATAATTAACAGCACTTCTCCTGATCGTACTCAAAAGGATTTATTAGCACCTTTGCCCAATCAACAAATCCAACCAAGAGGTACAACCGTTGCACAAACTACAGACATTCCTATCTATCATCATGTGGCTCACCCACGCAACTATCATTTCACTTTGGATGAACCTGATAAATGTAGTCAGTTGGATCCGTTCCTGGTCTTTATGGTCCCCGTGGCCCCCCATCAGCTGGAGGCTCGTAACGCCATCCGGAGCACATGGGGGAACGAGAGCTCAGTGCAGGGAAAAGCAGTGCTGACTCTGTTCTTGGTGGGTTTGTCTGGAGGAGCTGAAGCTCAACAGCAGCTGGAGGAAGAGAGTCGACAACACAGAGATCTACTGCAGAGCGACTTTGTGGACTCCTACTTCAACCTGACCATAAAGACCATGGTGATCATGGACTGGTTGGCGACTCGCTGCCCTCAAGCAACTTACGCTATGAAGGTTGATTCAGACATGTACATAAACCCGGAGAACCTGATGAGCCTTTTATTGTCACCCAACACACCCAGAGAGAACTACATCACAGGATATTTGATGTGGGACCGGCCTGTCGTCAGAGACAAAAACTCGAAATGGTACGTGGCAGAGGAATTGTACCCAGAACCAAATTACCCCACATACCTGCTTGGAATGGGATATGTTTTCTCCAATGACCTGTCGGGAAAAATAGTTGAGGCTTCCAAGGAAGTACAGCCCTTTAACATAGAAGACGCATATGTGGGTGCTTGTCTGAAACAATTGGGTGTCGCACCCTCATCTCCCCCAGACCCTTCACAGTTTAGAGCCTATCTGGGTCAATACTTTAGAGAAGATTTTTTAAGAGTTATTACAACAATCCTGGGATCCCCACAGCAGCTAATAGACATTTGGAAGGATGTAAAGAGGCCAACATAAAAGTACTGgagcacaaaaaaactaaaaccagaTTTCAGTTTTCAAAGAGAAGTCTATTTAAGGCAtcagtgaatgtttttttttaaacagaatgtCTATTGGGAGCCTGCCttgttggcagaggctatttacaaTAACTCCACCGAACAATGGGTGATTGGGCTAGTCACgattataaaaaatgaaaaataaagtattggGTAGGTGTAGGAAGTGCTTTATTGTACCAATAAGGTGGCCTTcatttaaaggtgctgtatgtaggattttgactctactaaagcataaaagtactataatatgtttgcagatatttaagaaacatgctaaattaacaaaaacaatgccACATTCACGTATTCTCATTTGAAAATATGCGTTCCGACCGGAATTTCAGCTATTgatttggtttgtgaaacctgCCCATTGCCAGTTTACCCTATGGTGTTTGTGAGccctgggttgccagttggtggaaaacaCAGCACACTTCATTTTTTCACTGCTATTTTAACATAGTGTACAGAATCGATAGCTGTTTGCATTAAAAgctaatgctttttttctaaaagctGAGACTGGGGTAATGCCACACGCATGTGGATACGCTGACTCTATATAGACGGGGCCAGCCGCTCatgcaaaatgcattcttgctgaaaaaACATCTCGAGGcacatttttaaaggttaaCTGATTTTACCAGGAAATGGGATTTTAAAAACAGGCGGAAATGTCAAAGAAAGCAACGATGTTCATTTACGTAGCAGCATGGTGGAAAACAAATGGGTGTGCAAAATAATATAACCTTTCGCAAATCTATTTCAACgtcaatgtacatttttatggaaTAAACACAAAAGCTTATACTAGTATACCTAtgtatacacaaatacattctGCGTAATAACGATTTTAAAGGTGCACTAGGTGATCGTCTTCagaaaagtttttgttattGTTCTAAGTGgtctaaatgtatttgtattaaatctGTGGAAGGCGTAGAACCAAGAAATGTTCGTAGGACCAATGAAAAGCCTTGTAATTGGCTTTATACCAGCCTGTGAACTTCTGAGCGCTTTCACAACGAGAACAGCAGATGAACATCAGCAACCCCATCTTCCCTCCTGGTATTGTAGTACTTAAACTACTAGTTTCCCAACAGGTGAATGTCACATGATGCAGCCCAGCAGTTCCCAATTTCAGTCCTTGTGCCCCCCGCTctatatattttgcatgtctcttTTAGATAACACACCCAGTTCAAATAACCGGCTCGTCAGGAGTGAGCTACATGCGTGAACTGTGTTCCTGGTTTACGGATTTGCGCTGCACAGCGTCTACCAAACTAGCGTGAAGTGTGACGCCTCcggaaataatttaaatttactcCTCACACACTTTTGTATGGAAATATACACACTTCGCTTGGAACTGTAATCGTGGCGGAACAATATGGCACCTTTAACTGAAGGTGTTTGCAGagcaaatttatttttcatttatctctCTATTGGGACAGGTTGTCTGTTTATCTTGTAAATTGAAACTGTAAGCTAATTTATTTCCCATTTATGTTGGTCAGAACAAGGGTTtgatttatgtgcatttttattgtttcgTGGGTTTCAAACCtgatgtaatctttttttttgtagtcttTAAAGTTAAGTTTCCCTTGATGTTCAATGTTCGATGAATACTTTAACTGAAATGTGCCTCACCAGTCTAAAAAGAGTATTTAGTGcagatgataaatatatatatatatatacacacacacacacaatttatttttgtttgtgaacTTTGTGTCATTACAATCAAGGTTTCATTTTACTTTTGGTTCATGTTCTTAAACAATGATTTTAgcctgcatttatataaaaccctcttatttatatttctaaggAAATTTAGTGATGCATTATTCTCAGTTGTAGCCTCTCATACTGGAATTATGGAAATCAGGATACACCCAGTTTTGACTATGCTGCAAGTAATATGAATTAGATTACCTTTACTAAGTACACAGTTGGTAATATGAACACACGGTTCTAAGTTTCTAAGTAATGTAATATGAGATGATGGTAGATTATTAAAACTTCCTGGTTTCCTCCACAAAAAGCTAAAGTATTTCACCATTGGCTTTGTGACCAATAAAGGTCATTTCATCAATCTAGAATATTAATGAATTTTGCATgtctattttgcttttattcaaaacatacctaaccagcatatggtggttttttcagcagggaatATAATCACCATCCATCTTATTTGTATCCTGCAGCACCTGGATACTAGACCGCAAGCTTTTAAACAAAACGCTGATCCTTTTCTGAAGATAAATCAGCTGTTCGCACAGTAACACAACATCTAATGGGCCTCTTTTTacttcagtgttttcattttgtcagaaaaagtaatgttttcagACAGTGGTGTTTAAGGATCATTTTATAATTaggtgtactgtatatatggaatttgaaaatgtgaaaagagagaaagatttcctttttttctcaaaaaagcaAACACTAATACCGTTAGTCAAGCTCAGGGTTAgttggttttggttttttttttattctaaaagcaGATATATTCTGGCTATGTTATAATTATGTTACTGACAAAAGTATTCATAGCTTGGAAAAATACCTAGAATTTACATGCTACACTGCACATTGCATTgtaatgtgaaaatgtaaaaaggcaTAGTTTTCACAAAAGTGATTAAATCGTATTTTCTCAAGACAAATTTGTAtattctgttttaaaagaaaaatacctTGAGGGACAAAAGTAACAGTGGGCAATGTCTTAACACTAACCATGTTATACAGCAGGCAACTGagtattacaaaataaaataaaataatgta

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223942.1 True 4274 mRNA 0.38 2 12473253 12478935

Neighbor

gene id symbol gene type direction distance location
LOC122327840 NA coding upstream 1918 12469118 ~ 12471335 (+)
LOC122327055 LOC107569129,LOC107655331,LOC107715742,LOC107659297,LOC107716435 coding upstream 48551 12421681 ~ 12424702 (+)
LOC122327054 LOC107715704 coding upstream 51596 12414582 ~ 12421657 (+)
LOC122328076 LOC107659298,LOC107716432,LOC107570368,LOC107575070 coding upstream 61412 12408361 ~ 12411841 (+)
aars2 aars2,LOC107715740,LOC107655390,LOC107575073 coding upstream 65021 12398320 ~ 12408232 (+)
vasna vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741 coding downstream 6270 12485205 ~ 12503977 (+)
dnaja3b dnaja3b,LOC107716437,LOC107659308,LOC107655350,LOC107715716,LOC554962,LOC107569120 coding downstream 57162 12536097 ~ 12542684 (+)
LOC122327087 LOC107659305,LOC107722666,LOC107755331,LOC107655385,LOC107569131,LOC101886628 coding downstream 166246 12645181 ~ 12650074 (+)
mrps28 LOC107659331 coding downstream 179129 12658064 ~ 12658715 (+)
LOC122327869 LOC107755343,LOC107655376 coding downstream 209989 12688924 ~ 12699036 (+)
G152068 NA non-coding upstream 46281 12426756 ~ 12426972 (+)
G152028 NA non-coding upstream 141408 12306554 ~ 12331845 (+)
G151983 NA non-coding upstream 219967 12252841 ~ 12253286 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding upstream 233809 12239108 ~ 12239444 (+)
G152015 LOC107570371,LOC107664873 non-coding upstream 256407 12216447 ~ 12216846 (+)
G152095 NA non-coding downstream 100347 12579282 ~ 12617819 (+)
G152092 NA non-coding downstream 101904 12580839 ~ 12620676 (+)
G152101 NA non-coding downstream 110978 12589913 ~ 12629300 (+)
G152083 NA non-coding downstream 125153 12604088 ~ 12655074 (+)
G152115 NA non-coding downstream 163122 12642057 ~ 12642495 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 49331 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 127503 12345206 ~ 12345750 (+)
G152032 NA other upstream 178536 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 196645 12010469 ~ 12276608 (+)
LOC122327156 NA other downstream 588479 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 628571 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 697492 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 904218 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 925907 13404842 ~ 13509252 (+)

Expression


Co-expression Network