LOC122328226 (LOC107549362,LOC107704491,LOC107742801)


Basic Information

Item Value
gene id LOC122328226
gene name LOC107549362,LOC107704491,LOC107742801
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2876058 ~ 2878821 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223943.1
AGCATCGAGAGGGCTAGTGCACAGTCATGGCTTGTGCAAAGCAAGATATAGGTACTTTTGACCAGAGCTTGGAAGCCGAGAAAGATTTAGTTGAGGAAGATCAGAATGCCGTCAATGTTGCTCCTGACACAGTGCTCCAAGTGGAGGGGGAGTTGTTCTTTGTAAACCGTGAGCAACTGGCCCATCTGAGTCCCTACTTCCGAGCCTTGTTTTTTGGGGGTGGTCGGGAGAGCACCAGGAAGCACATTGAGATTAAGGGAGTTGGACTGCAGCAGTTCCACACACTAATGGAATTTACAAAGGACTCGAAGCTGAACATAGACTGCAAGAATGTCCTTGACATTCTGGAGGCTGCCGACTTCCTTCAGCTGGATAGGGCTCGGTTACTCTGCTGCAAGTTCTTGGAAAGACAACTGCATCTCAGTAATTGCTTGGGAATGATGGCCTATGCTTGGCAGCTTGGCTGTCTGGACCTCTACGCAGCAGCCAGGGATGTAGTCTTGACACACCTACCTGCCTTAGCCTCCGAGCAGGACTTTATGTTTCTTCCGAAGGAGAGTATTGCTGACCTACTTGCTAGTGACAACTTAAGCATTCCCAAGGAAGATGTGGCTCTTGATGTGGCCATTCGCTGGGCAACATTTGACCCAAGTCGGGAAGAGGACTTCATGGAACTAGTAGGTCTGGTTAGACCCGAGTGTTTAAGTCTACCCTACATTACTGACCTTCTGACCAAGATAAACAGTTCAGACCCACGTGCTAAGCTTATTTGTAGACTGAACGATAACTTGCCAAGCAGTTGGACTATAGGCAGGTCCATGCCTAGAACTCGCTCAAGGGAAACCCTGTTTGTTCTCGGTGGACCACATGAGCAAGAAACACAGCTGCTGTATCAGTTTCACCCCTACAGTGGAAGGTGGCAATCCCATCCACCCCTGCAAAAGAAGTGTCTCACACAGTATTCCGTGGCAGTAATAGGGGACAACATAGTAGTGACCGGAGGCTACTTCCGGGATGTGTTATGGTATAGTGTGGACTGGGTGAGCATTTACGAGCATGTAAACAAGCAGTGGGTGGACGGCCCAGCAATGCAGAAGTCCAGACACAGCCACTGCTCAGCAGCTCTGGAGTTCCAGCTGTTTGTGTTTGGCGGTAGCATGGACGAAGGGCCTGTGGCCGACGTCGAGAGGCTGGTTTTGGGAGCCATGGAATGGGACACCGTCAGCCCCATGGTGCGGGCTGTGGAAAGGGCAGCAATTGTCACTTTGAGGACTAGTATTTATGTGGCTTGTGGTCTAGATGAGAATGGGGATGTTTACAGTGGGATTCAACGATACAGACCAGCAGCTGATCAATGGGATGTGGTGTCCTATTCTCCATTTCCACGttacgACCTTCTTGCAACAGAGCTAAATGGTGCCCTCTATCTCCTGGGAGGACAGGCTCTGCGCTTCGACATTGACACGGATGAGTGGACCGTTCTTCAAGAGGACTGTCTGGACAATAAATTCTTCACAGGCTGTGCCACAGTTAACGGGCAGATTTACATACTCAGCGAGAGGAAGATAAACAAAACGTACCCAAACATGATTCTACTGGACCCTTACATTGACACTTGCTTAGAAGTTGATGATAAAATACCCTGTCCTGTCCCCATAAGAGGTTGTATCACAATGCATGTCAATCCTTTCTAAAGCCACAATGTCAACACTATTCCTTCCTTAAATGTGAGGACAATTACTAAGCCAATGCAGGAACGTATTGTTCAACAAAGTTgaacaaatgttaaataacaaATGTTGAACATTGTTATCAACAAAGATAATCATattctaaatcatttttattgttatttaaaaggTCACAGAGAAAAATGGTGAAGCAAGTATGCAACATTAagagttttattatatatatatatatatatatatat

Function

NR:

description
PREDICTED: kelch-like protein 23

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223943.1 True 1933 mRNA 0.46 3 2876058 2878821

Neighbor

gene id symbol gene type direction distance location
fbn2b fbn2b,fbn3,LOC107704489,LOC107742800,LOC108441289 coding downstream 26499 2784678 ~ 2849559 (-)
uhrf1 uhrf1,LOC107561590 coding downstream 127468 2735159 ~ 2748590 (-)
kdm4b kdm4b,LOC107717157,LOC107742799,LOC107679073,LOC107561592,LOC107549366,LOC107660208,LOC108412081 coding downstream 142228 2690626 ~ 2733830 (-)
ptprsa ptprd,LOC107559826,LOC107679075 coding downstream 406497 2297233 ~ 2469561 (-)
tbxa2r tbxa2r,LOC107744660,LOC107678103,LOC107559829,LOC107562097,LOC107679093,LOC107717168 coding downstream 586731 2282224 ~ 2289327 (-)
trnad-guc_18 NA coding upstream 743 2879564 ~ 2879635 (-)
trnad-guc_19 NA coding upstream 1513 2880334 ~ 2880405 (-)
rad23ab rad23ab,LOC107717165,LOC107704496,LOC108271249,LOC107702626 coding upstream 1733 2880554 ~ 2887494 (-)
calr3a calr3a,LOC107702625,LOC107717161,LOC107561598,LOC107549384,LOC107704500,LOC107742789 coding upstream 9361 2888182 ~ 2891766 (-)
LOC122328125 LOC107570673,LOC107575767 coding upstream 62183 2941004 ~ 2949697 (-)
G148860 NA non-coding downstream 116371 2698113 ~ 2759687 (-)
G148749 NA non-coding downstream 283329 2591572 ~ 2592729 (-)
LOC122327855 NA non-coding downstream 312835 2527094 ~ 2563223 (-)
LOC122328197 NA non-coding downstream 351756 2518437 ~ 2524302 (-)
G148707 NA non-coding downstream 719241 2156256 ~ 2156817 (-)
LOC122327605 NA non-coding upstream 17139 2895960 ~ 2898650 (-)
G148906 NA non-coding upstream 162631 3041452 ~ 3045417 (-)
G148927 NA non-coding upstream 223758 3102579 ~ 3102897 (-)
G149071 NA non-coding upstream 314467 3193288 ~ 3194804 (-)
G149074 NA non-coding upstream 354851 3233672 ~ 3235759 (-)
gpr35.2 NA other downstream 625497 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 759875 2114320 ~ 2116183 (-)
G148613 NA other downstream 1211431 1661185 ~ 1664627 (-)
G148574 NA other downstream 1221718 1643710 ~ 1654340 (-)
LOC122327997 NA other downstream 1261520 1583015 ~ 1614538 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 172579 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 345327 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 376575 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 446754 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 499211 3378032 ~ 3451429 (-)

Expression


Co-expression Network