XLOC_006814


Basic Information

Item Value
gene id XLOC_006814
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36995633 ~ 36997760 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013873
TACAAATGAAGGTACCTTTTATTGCAAACATTTGAGGACTTTGGCACCTGCAAGGCACAGAATACACTTCCATGAGAGTACAGAGTCGAACGGGTCTGCAAAGGAACTGGGGAAAATAATTATTTCACTTTCACATAGGGAACTCCTTTCACAGAAAGGACAAAGTCTAGCTGCAGACACAAAGAGTTAACAGTACGTGGAGCCCAAGTATGATGGGTTATCATCCGACACAAGCGATCGGCCTCCGTGAACTCCAGCAGCAACCAAATTTACTGTTAAGACGGCCATTTCCAACCCACTGCGGCTTTTCAAAGGGGCAGAGAGATGAATGTAAAGACTGATCAGGACATCTATAGGTAATAAAGTCATGCACCTAGGCAAAGAAGAGCAAAACTGCACTCATCTTCTTCATGTTTAGGGTCTACCTTCCTTTAAATGGAGTGTGCACACGCTTTCTTTCTTGCTTAGATGAAAGAATAGAATGTTCCAACCTTTTTTATAAGGTTTCTAATACTGTCTCCCATTAACAGCTTAATACTGACAGGCAACAcaccattaacacacacacacacacacacacacgcagcagtCATTTTTTCTATAAAACTAcataataaagaaatattaacTTCCAGTTTGACATAAACAAAGGCAACAGATAGATTAAGATACTGGGAAAGTCTATGGaagacttgatttagattttctttttccGCCCTTGATCAGGCGGTTTGTGCGCAAACGTCTCTACATCAAGAGAATGAAATTCCATCAGTCTTTCGACACACCCGACACCAGGCCCTCTGATTATGATGCACACATGATTCAGTACCACAATCCCAAAAAGCTCATTAGGTTTAGTGTTATTCTTGGAGACGGGACTGGGGCGTTACGTCGACGAAGCTGCGGGAGTGCAGAAACTTTAGTTTTATATTCAGAAAACCTGCATAGTGAATTCAAGGCACTGAgggtttacacacaaacacacacacacactttggtaAGGCAGCTTTTTTCTTGGTTTTGAGGATTTTCATGATGCAAATTCccttgatttctttttttatatatacacagacGCATACTAAatgatcttaaagggatagttaaaccaaaaatgaaagattctgtcatcatttattcactgtAATGTCATTCCAAAACCCAAACCTGTATGATTTGTTTCTTTGTGGAACACAGAAGATATTTAGCAGAGTGTACCTGCTGCTCTTTTCtgtaaactgaaattaaaaagtAACTGGAACTTGTGAAAGTGTTCTCATAGCACATATCACATCAGTGTTAAGTAGCACCTGAAATCCATAAAAGTGCTTATATGGCTTTAAAAGATTTGAAGAATGATATTTTATAAGTTTATCATGAATAAAGATTTGAAATAATAGTCAAGAGTTGATGTCATATTGAATTTAAAGGTATAGTCAACTCAAAATTGTAAATTCAttgtgatagttcacccaaaaatgtcaaatctgccatcatttactcatccctcactcgttcaaaacctttttttgtttggcttctttctttctttctttctttctttcttctgttgaacaaaaaagaagacattttgaaagaTGAAGGTAGCAGGTACCCAATGACTTCTATTGAGAAAGAAACTTGTAAAAGTTTAAAACCggtctcaaactggatttctggaggaccattggtttAAAACCACATTACTCTCACAGCGAGAGTAAAGGATGAGGTCATTTTTGAAAGTCATCATGTGCTCACTCTGCATGTCTTTGCTCTGTAGAacagaaaaagaaatattttgaagaatgttgacaaCTTGAGTTTCAGTTTCCACTTTATGGACAAAAACACACAGGAAATCGACGGAAACCAAACTGTTTGGaaatcaacattcttcaaaaaacttTGTGCTCTGCAGATAAAAATGCCTTAATGTCAATGAAAACAAGAAAGTGATAACGCAGGACCTCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013873 True 1978 lncRNA 0.37 2 36995633 36997760

Neighbor

gene id symbol gene type direction distance location
XLOC_006813 trim9 coding downstream 84515 36868365 ~ 36911118 (-)
XLOC_006812 pygl coding downstream 132594 36846789 ~ 36863039 (-)
XLOC_006811 nin coding downstream 150688 36800334 ~ 36844945 (-)
XLOC_006810 sav1 coding downstream 197429 36787077 ~ 36798204 (-)
XLOC_006809 map4k5 coding downstream 234179 36705595 ~ 36761454 (-)
XLOC_006815 NA coding upstream 12052 37009812 ~ 37012236 (-)
XLOC_006816 syne2b coding upstream 77562 37075322 ~ 37127970 (-)
XLOC_006817 NA coding upstream 112452 37110212 ~ 37110536 (-)
XLOC_006818 si:dkeyp-77c8.1 coding upstream 174216 37171976 ~ 37180815 (-)
XLOC_006819 AL845493.1 coding upstream 180842 37178602 ~ 37178716 (-)
XLOC_006471 BX537274.2 misc downstream 26730728 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36169408 825904 ~ 826225 (-)
XLOC_006804 BX927407.1 non-coding downstream 383474 36587770 ~ 36612159 (-)
XLOC_006797 CR361558.1 non-coding downstream 596258 36399260 ~ 36399375 (-)
XLOC_006785 BX510990.1 non-coding downstream 1033167 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 1070149 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 1403256 35592242 ~ 35592377 (-)
XLOC_006829 NA non-coding upstream 530401 37528161 ~ 37535785 (-)
XLOC_006836 NA non-coding upstream 634866 37632626 ~ 37636598 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G71198 NA non-coding CI01000012 null 4876405 ~ 4878412 (+)