LOC122327170


Basic Information

Item Value
gene id LOC122327170
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13106192 ~ 13109794 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247615.1
AGATTCTTggttatttaaacattaaggAAACATTTCAGTGCACCATTCTACAAAAGTAATGGGAATTTCACATCTGAAGCAAGTGGTAACAACTGAACATCCACCATGAATATCTAAGTGTTTCAGTAGATTCATCTTAACTGTTGTTTGGAAGGAACCAGGTTTTATTCTGAAGTGTCTTAACACATAACAACAAGATGAAGACCATTCAGCTTCAGCTCTatgtattGATCTGTTGTCAGTATGCGGTGTCAGATCTTCTGACTGATCTGGGATCAAATGTGACCATAAACTGTGATCTTGATGAAAATGAGGTTTATTGGATTTTACTGAAAACAGCAGATCCTCCAACAGTCATCCTAC

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247615.1 True 363 lncRNA 0.37 3 13106192 13109794

Neighbor

gene id symbol gene type direction distance location
LOC122327157 LOC107575395 coding downstream 45719 13059089 ~ 13060473 (-)
LOC122327164 LOC107569775 coding downstream 52617 13051332 ~ 13053575 (-)
LOC122327163 NA coding downstream 84147 13018008 ~ 13022045 (-)
LOC122327155 NA coding downstream 90526 13013881 ~ 13015666 (-)
LOC122327159 NA coding downstream 111093 12993212 ~ 12995099 (-)
LOC122327152 LOC107655325 coding upstream 21712 13131506 ~ 13135336 (-)
LOC122327211 LOC107568072 coding upstream 25811 13135605 ~ 13153861 (-)
LOC122327158 LOC107659310,LOC107659300,LOC107655325 coding upstream 59154 13168948 ~ 13170194 (-)
LOC122327213 LOC107655323,LOC107566026 coding upstream 70881 13180675 ~ 13183947 (-)
LOC122327153 LOC107720344 coding upstream 78541 13188335 ~ 13191658 (-)
G152443 NA non-coding downstream 7416 13094105 ~ 13098776 (-)
G152468 NA non-coding downstream 49634 13056318 ~ 13056558 (-)
G152466 NA non-coding downstream 50932 13054995 ~ 13055260 (-)
G152463 NA non-coding downstream 68593 13037379 ~ 13037599 (-)
G152454 NA non-coding downstream 103308 13002373 ~ 13002884 (-)
LOC122327171 NA non-coding upstream 11949 13121743 ~ 13124660 (-)
G152546 NA non-coding upstream 196650 13306444 ~ 13306916 (-)
LOC122327053 NA non-coding upstream 212549 13322343 ~ 13326566 (-)
G152623 NA non-coding upstream 428733 13538527 ~ 13648378 (-)
G152624 NA non-coding upstream 430428 13540222 ~ 13566877 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other downstream 191949 12906133 ~ 12914243 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 537465 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 742797 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 960617 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 1056654 12045469 ~ 12049538 (-)
si:dkey-222p3.1 NA other upstream 88240 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 269895 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 468007 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 715575 13825369 ~ 13829699 (-)
shoc2 shoc2,LOC107717661,LOC107720363,LOC107685511 other upstream 721690 13831484 ~ 13849120 (-)

Expression


Co-expression Network