LOC122327171


Basic Information

Item Value
gene id LOC122327171
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13121743 ~ 13124660 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247616.1
ctcaattgtaagtcgctttggataaaagcgtctgcaaaatgactaaatgtaaatTTTCCCACTATGTGATAGTTGTCATGGTTATTCTTTGAAAGGGAACTCGACCTGCTAAGAAAACACAATTGGAAGACCTTCTGGGTGACCACGCTCTGAATCTGCTGTAGAatctctccttttctgtcaGAGCCCTCAATCCTCCTGGTATGAGGAGTAAGGCAATGCCACACTTTGAACAGGTGCTTGCGAGCACCAAGACTTTTTAGCATCTTTTTTTGCTTCAGTGGTGTGATTCCCACTCTGGTGAGTCACAGGCAGGCTTTGGTTACAGAATAGACAGTAGACTCTCCTAAGGAAGTCAACGGGGTGAAGTAGAGTCTGGGTTCTACAGCCAGTACTTCATAATTCCAAAGAAGCATGGGAGGCTGTGTCCAATATTAGATTTGCGTCTGGTGAATTGCTCAGTCTAAAAGACATATACTTCCACGTCTTCATCCCTCTGTGTCACGGGAAGTTCCTAAAGTTCGCTTTTAGGGGCAAAGCATACCAATATCAAGTTCTTCCCTTCAGTGAGGCACTCTCACCCACATGTTTATGAAAGTAATAAATGCAGCTCTAGCTCCGCTGCGGCTTCAGATTACATCAATGATTGGCTTATATTAGCTCAGTCCACACTCACATGAAACAGTTGGGGTTAAGACTAAACACCAAGAGAGTATGTTTTTTTCTATCAAAAATAAACCACTTATCtgggcgtggtgtgggattcgatgATGCAGGCACAAATGTCTCCTGTTTGGATCTAGTCAATCCTCACATTAGTCAAGTGAGTGAAAGAAGGCAGACTACCGGGAAGTAGTCGATATGCtcaagcgtcacttacccttcctggtggctggagGCGAGTCTCCGTCGTTCCTCCGTCCCGGCGTGGGTACGAGTgagaggggatgacgtcatcaggtgccgcccaactgtgccgtctaagctccgccttgcccgcattctccaccagtgtgacgggaggagccaacgacagactcagtgggcgtggcgtcaggcctcggagaggcttttttattaaacaaaataaatacaaaataaagtgtccagggagaaagtgtccaaataaaaaagggggaactggtgtccttgTGCTGCAGGGAAAGTgcaaggtcaggtagtgttgcagggggcagggtccaggtaaggggcggagtccggcggcggcttcttccgcggcatctccatcgcttctttcctccggttgTCAGAGATTAAGGGGAtaaacggctcggcatcctggcccgtcagccgtacACAGGTGCAGTCGTCACCTGGACTATACGGGggtcatcgcctggactacgtGGTCCTAGCGGCCGGcaagctccttcacgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctctcgaggagaggcgtgTTCggcatttaacatttaacgatttttattatttaaaataataaagtaatacacACCTAGGATGTCTTAAAATATAGTTAAGTATAGTggaattatcatttttgggtgaatgtAATGGTAAAACATGttgcatgattcattttaataacaagcTTGTATCTGAACAGAAAATTCctactaatacatatttaataagttaaaaaaataaccgTGTCCACAACATTCTGGTGTTGTTATGGTGACTCCTTTTCGATTAACTTCTTTTTCTTGGTTCCCTTGGAAATGCTGCCTCTAAAAACTGACTGAACGTAACTGGCTCTGGTGAGTTTGGGTGCGATCAGTTGTAtcaaattcatattcataatgtCACGTTGTAGTTCAAGAGAGAAGGAGCACTAGATGAGAAtataacaaatagttttttaatcttctacacTCGAAATAAACAATGTAGTTGCAAGCAGGCAGGCAACAAAGACGATGATCGGACCAACTGAATGgaaacaaactggacttaaatactcaaagtaaattactaaataaacgAGACaactgaagacaatgatacaattaactgaaatgaaaagtaGGGCATACAGAGCACATggaacatgaaaaacaacaacaaaaagtccaAAGATGTGACACATAACCAGTCTTACAGTCATGGTGTTTTCCTGGCTGAGCTGGCAATTAGATGCCTGGTTCACATGTACCTGGCTAATTTGATCACATACTCCAGACCATATATTGGCATTATAATATCAAATCATTGTATATGAATAGTAAATAAAGAAACCACTAACCATTGTGAATCACGTTTTGCAGCTTTTTATTGAAAGCATTACACCTTGAACATTAGTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247616.1 True 2337 lncRNA 0.44 3 13121743 13124660

Neighbor

gene id symbol gene type direction distance location
LOC122327157 LOC107575395 coding downstream 61270 13059089 ~ 13060473 (-)
LOC122327164 LOC107569775 coding downstream 68168 13051332 ~ 13053575 (-)
LOC122327163 NA coding downstream 99698 13018008 ~ 13022045 (-)
LOC122327155 NA coding downstream 106077 13013881 ~ 13015666 (-)
LOC122327159 NA coding downstream 126644 12993212 ~ 12995099 (-)
LOC122327152 LOC107655325 coding upstream 6846 13131506 ~ 13135336 (-)
LOC122327211 LOC107568072 coding upstream 10945 13135605 ~ 13153861 (-)
LOC122327158 LOC107659310,LOC107659300,LOC107655325 coding upstream 44288 13168948 ~ 13170194 (-)
LOC122327213 LOC107655323,LOC107566026 coding upstream 56015 13180675 ~ 13183947 (-)
LOC122327153 LOC107720344 coding upstream 63675 13188335 ~ 13191658 (-)
LOC122327170 NA non-coding downstream 11949 13106192 ~ 13109794 (-)
G152443 NA non-coding downstream 22967 13094105 ~ 13098776 (-)
G152468 NA non-coding downstream 65185 13056318 ~ 13056558 (-)
G152466 NA non-coding downstream 66483 13054995 ~ 13055260 (-)
G152463 NA non-coding downstream 84144 13037379 ~ 13037599 (-)
G152546 NA non-coding upstream 181784 13306444 ~ 13306916 (-)
LOC122327053 NA non-coding upstream 197683 13322343 ~ 13326566 (-)
G152623 NA non-coding upstream 413867 13538527 ~ 13648378 (-)
G152624 NA non-coding upstream 415562 13540222 ~ 13566877 (-)
G152687 NA non-coding upstream 678151 13802811 ~ 13803247 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other downstream 207500 12906133 ~ 12914243 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 553016 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 758348 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 976168 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 1072205 12045469 ~ 12049538 (-)
si:dkey-222p3.1 NA other upstream 73374 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 255029 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 453141 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 700709 13825369 ~ 13829699 (-)
shoc2 shoc2,LOC107717661,LOC107720363,LOC107685511 other upstream 706824 13831484 ~ 13849120 (-)

Expression


Co-expression Network