LOC122327175


Basic Information

Item Value
gene id LOC122327175
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12083507 ~ 12086914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247617.1
CTTTTTGCTTGACAATAAGACGGCACATGCGCAGATGTATCTATTTCAAAACGAATGTGAATTGACAtggcattataatattttgataacAAAAATCTCATCCGGCAATTACAAGAGCTCATGTGGTGATCgattcttggAGGCCGGGTGCTTGCTGAGAGGTTTTGGGGATTGTAGATGCGTCACGCTGCAGGCGCATAAGAGAATGCCCCCGAATAAACAGAACAGAGATGCGACAAACGCACCGATCAGAGACCTGCCGACCACAAACCTGCAGAGACCCAACGCAGACGGTCAGTACTGAGATTCCAAAGGACTTCACTGAATCAGCGAATCTAACGACTATTAGAAACGAAAAACTCACCGGCGCACACAGAGAGCATTCCTCCCAGGAAGGCGGCTCTGTCCTTCGACTTCTTGTTCTCTTCTAAACACCTCGTGCATCTGAGACCGGAAATGGCCACCAGCGCGGCGAAGCTTGACAAGAG
>XR_006247618.1
TCGTTGTTGTTCGGCTAAACATCTTTACTTCTAAATAAGTAAACGGGTATAGGGGGATAACGCAGTCaagttatatattttgcaacaaCGTGACGTCTTTGTCTGTTTTAGGCACTGAAAAAGAAACCGTTTCAGAACTTTTGACTGacagagtcaagttttaaataggaaaaacgTCTGTtcgaacgcgatgctactggtctaattggattcagtgatctatgctaagctatgctaaaggtgttatcgccagacccggagaccGGCTGAATAGATTCTGGAATCTAGGTAGAACTCAATTTATTAACTCTAGAGGAGTTGGGAGATGAGCACATTTCCCCCCAAAAGTGAAGTGTTCCTATAATAGCCGGAGTTTTTGTTCAGgattcttggAGGCCGGGTGCTTGCTGAGAGGTTTTGGGGATTGTAGATGCGTCACGCTGCAGGCGCATAAGAGAATGCCCCCGAATAAACAGAACAGAGATGCGACAAACGCACCGATCAGAGACCTGCCGACCACAAACCTGCAGAGACCCAACGCAGACGGTCAGTACTGAGATTCCAAAGGACTTCACTGAATCAGCGAATCTAACGACTATTAGAAACGAAAAACTCACCGGCGCACACAGAGAGCATTCCTCCCAGGAAGGCGGCTCTGTCCTTCGACTTCTTGTTCTCTTCTAAACACCTCGTGCATCTGAGACCGGAAATGGCCACCAGCGCGGCGAAGCTTGACAAGAG

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247617.1 False 488 lncRNA 0.48 3 12083507 12084690
XR_006247618.1 True 741 lncRNA 0.46 3 12083507 12086914

Neighbor

gene id symbol gene type direction distance location
uts2d NA coding downstream 28111 12054271 ~ 12055396 (-)
LOC122327260 LOC107664925,LOC107741564,LOC107655340,LOC107715693,LOC107564927,LOC107560680 coding downstream 30012 12050679 ~ 12053495 (-)
si:ch211-117l17.5 LOC107655356,LOC107715708,LOC107741540,LOC107564934,LOC107664973 coding downstream 40440 12040276 ~ 12043067 (-)
rgs2 LOC107741538,LOC107564933,LOC107664962,LOC107560697,LOC107735525 coding downstream 51145 12030462 ~ 12032362 (-)
LOC122327835 NA coding downstream 213222 11862795 ~ 11870285 (-)
LOC122327878 LOC107664873,LOC107570371,LOC107664867,LOC107570369,LOC107563524,LOC107655402 coding upstream 113086 12200000 ~ 12206631 (-)
LOC122327083 LOC107664867,LOC107570369,LOC107655402,LOC107570371,LOC107664873,LOC107563524 coding upstream 136573 12223487 ~ 12230101 (-)
LOC122327080 LOC107655402,LOC107664867,LOC107570371,LOC107664873,LOC107570369,LOC107563524 coding upstream 161265 12248179 ~ 12254746 (-)
LOC122327050 LOC107570370,LOC107664859,LOC107741528,LOC107664867,LOC107570371 coding upstream 173195 12260109 ~ 12268021 (-)
vtg8 LOC107715730 coding upstream 183214 12270128 ~ 12278886 (-)
LOC122327264 NA non-coding downstream 3390 12076741 ~ 12080117 (-)
G152234 NA non-coding downstream 56712 12026112 ~ 12026795 (-)
LOC122327268 NA non-coding downstream 86462 11993123 ~ 11997045 (-)
G152223 NA non-coding downstream 90474 11992713 ~ 11993033 (-)
G151919 NA non-coding downstream 493584 11587661 ~ 11589923 (-)
G152300 NA non-coding upstream 204002 12290916 ~ 12291260 (-)
G152332 LOC107716433,LOC107659337,LOC107575798 non-coding upstream 323686 12410600 ~ 12419443 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding upstream 331444 12418358 ~ 12426088 (-)
G152339 NA non-coding upstream 339842 12426756 ~ 12426972 (-)
G152340 NA non-coding upstream 347667 12434581 ~ 12434956 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 33969 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 238365 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 278809 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 592853 11465852 ~ 11490654 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other downstream 852258 11229974 ~ 11231249 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other upstream 55928 12142842 ~ 12145575 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 270769 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 473929 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 819219 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 1111120 13198034 ~ 13202269 (-)

Expression


Co-expression Network