G15338


Basic Information

Item Value
gene id G15338
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4343888 ~ 4348581 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17137
AAATGAATCTAGCACCATTTGAAATCAGTGTTCTTGGGGTGGGAAATGCATCACTTTTTATCTTGAAAACTGACAACATTCATGCTTTAAACTGTAAACCTCTTATATCCTATTTGACTTCAAGACCTGTGTCCTCTACCCAAGGTTGACCGATTTCTTTTGGTGTTCAGAGTCTTTTGGGGTTTCTAGCACCATTTGAAATCGGTTACAATGAAGGACAGATAACGACGCTGGAGTCATTTTCAGCATCTCTATTATATTTATCAGAATGTTTCATGGTCTTACAGTGAGTACAATCATTCAAAATGAATCATCAAGGTAACAACAGCAAAAATAGTAAATTTTATTATATAGTCTTTTGTAATTATATGATAAATAATACTATGCAACATAAACTTTACAGTCAAACACAAAAAAGTGACTTCAAAACAACTTTCTTCCAATCATTTCAAAGCTTCAGTTATTGAATATCCATATCTTCCAGTGGTTTCAAACTCTCTCTGTGAACAGCAGTCCAAAAAGTGAATTCAGTCAGGCAGGTGATAACTTGTCACAATACCATAAAGTACCACTAGGTGGCGTGCTTGCTTATATATTGTGGTCAGACACATGGTTATACTGAGAATGAAATGAAACTAGCATTTGAATAGGTGATGCTTCATTTTAATCCAGTTTGCACTGAGCTGTAATTTTTGTCATGTTTTTGTCATTTTTACAAAGACCTAAACAGTTCTATTAGGAAAATGAACTCTCTTTCAAACCAAAAAAATGCAGCATCTAAAATTTAAAATGGTACAACACACATAAAACATATAAAATAGATTTAAGTAGCAGGATACTCACAATATTATATACAGCTGTACGTCACTTCTAAGTACTTATGGACATCCGGACACAGATCAGAGTAGACAGAATTTGAAGCATTTAATTGACAAGACTTCTTCCCATTGCAACTGACAAGATAAAAAAAATAAATAAATAAAAAAAAAAACATTTTTATTTTATGCTGATGTTTTATTATTTATTACATTATATTTGCTATTTATTATGTTTAGTTATGCTGATTGTTTATTGTTGTGGTAGTTTCATGTCTCTTTTATTCTTACTCTTTTTGTTATGCACATAATTTAATCTCAAATCAATAACTTTTATTTTTTTAGCTGTTTAATAAGTGGTATAATGACTTGCTAACTCTCATTATACCTTATGATTCTTTTACATATTGTCTCAGAAGTAGCTGAACATTGTAAATTGATGTGTATGTGATCCAGTATGTCCTAGATGAAGTTTTTCTGCTGTACCTGGAACGCAGGCTGCTGGTCTGGGGAGAGTAACAGTCTGCAGTTGCTAATTTATGAGGGCAGATTACAAGATCCCGCCGTCCGTAATTTGCATAATGAATCCGAATCACACCATTACCTTTATAGACATAAAAATATTGGTGGGTTTTGCTAATGTACTCCTAAATTTTGACAAAATTCACTTTATATAGGACTTTAAGCAAACAGCCTGCTTTGGTCAGAAATATTAAAGAAATGAACCATTCAAAGTCAAAAGTAAATCAGTTCAACAACAACGTACACTATAGCATCACAGAACCAATGTGGATAAAGCAGGCGCAAAGACTACAGTTTATTGCTGGGTTACTATAATAACAACATAGAAATTAACTTGGAGAAAGAAAAGATGACCTTACCACAGTCAATGAGACTTTGGCTACCTTCACAAGTGACACTTTTTCCTTGAATTATATTGGAGAAACAAAGGTCAGTAATACTTATCAGTAACTACCAATTGAAGATGAAAAATTGACTTACTTAATGGGAGACACAAGTAGGACACATCCAGGTATTTGTAAGTCCCAACACAAGGGTCAGAGAAAACTGAGTTCACCGCAGGAACAGAACAGCTCTTTCTTCCATCACATCTATGATCGTACACAAAGCATTTGAGAAGAATTGCAGTTGTGTCATACAGTACTGTCATTTCTTTTGCTTTTAAAGAAGCAGGTACCGGATGGACATCATACGGACGGATGTTTCTTGGAAGCAGTCAACGTTTGAGAGCTGATCAAGTGATCTTCCGGTGGAGCATGTTGTGTGGTCAGTTCGCCCATAGTTAGCTGTAACCACCTTTATGTATCCCCAATCTGACAAATGAAACAATTTATCATGAGAACAATTGTGGAGTATTAACACTGCATTTGAATGTAGATTACTCACAGCAGTCGAGCTGAACAGAGCCTCCTTCACAAGTGAAATATCTTTTTGTTTCAACAACTGGAGAGAGAAAAGCTGTCTAGTATGCAGTAAAGTGCAATTACTTATTAAAAAGCAATACTGTCCTGTATTTCAGGGATTGTTTTGGATCGAACTATATGCTACATTTTTTACATAGCAAAACAGCTCAATAAGACCTTACCTTGTTGGCACAGTAAAATTAGCACTGCAAAATCAAACAAAACATTGGATTCTAACATCTGTCATTTTCAAAAGTGTCAAATTCGCATTGCAAGTCAACGAAAATATAAGTAAATTTAAATTATGCTTTCTTAAATGAAATAAAGAAACTGACTTACAGGAGATCCAGGTCAGATTTTGTGGCAGCATGTTGATATGTTTAAAAACAAGGAAGTAACCTCAATATTTATAAAGCTTTATCTCTGAAGAATAAAGATTAACAGCATATATATTGTCGCTGATGTGTGTCGAGCTCACTGCCAAAGTCTAACAGCCTCCAAATCAAAACGTGCAAAATGTTTGATTTAATTTGATGTTCTGAAGAAAAGTGAGTGGTTGCTGACCTAGTAAGGATGTTAATTATTACCATGCGGGACCTTTTCATATTTACAGTATACAATATAGTTTTGCATTCTTTGATTGCTCGTTCATTTTGAAATGTATTATGACCCAGAAACCTGAACTGTTATGTTCTATTTTAAGTCGTAAAGTAAGCAGGATATATTAAAAATGAAGCGCATGGATTCGGCAGGCATTCATGATACTAAGTGGGGAAGCCGGTGTGGTGAGAAATCAAGTTAACGTAGAAACGTTAACTGATGGTAGAGAGCGAGAGAGCACTTCTGTTGCATGCTCTTGAATGCTGATCTTCACTCAGAAAACATAAAATGCATGTGTAACAGTAGCCTATACTTGATCCATGCATTCGGTCTTAAAGTGACGGCAGCTTAATAAACCTGCTGCTGTGTTTTTAATGTTAATAAAACAACAAAGAAATCACTCACTGCTGAATGACTTCAATAAAAATTAATCTATATTTAATTTATATGCAGTGTTATTTAATGTGTAATTTAATTGTAAGACCAACCTGAAAAATCTGAAAAGCATTATTTTATTTCATTTGTATCTTTGTTCTATTGAATTTATTTGTGCTTTCTAAAATTTACATTAATTAGGCTAGTAGTTTTTGCTGTAGAATCAAAATTGTAATAGAGAATTGTGATATTTCACTGGTATCTAAACATTTAAACCACTGACCCAACCAGGCCAGTAGGAAAAAAATCCTTAACACTGAGCCCTGCTGAAGCAGCTCTAAATATGATAGAGCAATAGAAAGAACAGTGAAAGTAACAGAGGCTTGTACAATACATTTTAACAGGCATAATCAAGTTTAAAAAGAACTGAAGGAAATATATATTTTCTAAAAAAATAAAATAAACCAATGAATATGATTCATATTCTTTTGGTTTCTCTACCTAATATATTTTAAAAATTACAAATGCAATGAAAATACAGGTATCGGTATCAACGAGTAGCCTACCAAAAATGAAAGTATCAATATCGGTGCATCTCTAACAGCTACGCAATAAGCTCACAGTTAAAGGTGCTCTATTGTAAGAATGACAGCTAGTGGTTGAAATGGGTACTGCAGTCCAAATTCAAAATATTGTTTGCCCCGCCCCCTCCTCCTCTGACTCGACGCTCTCGCGGGTTGCCAGTTTGAAGACACGCAACAGGAGCGAGCTCAATTGACATTGGAAGGCGTGGAGACTTACACACTGTAAGATAATTAGTTGATTTATTGATTTATGATGAGTTGATATTTAATATGCTCCCTTTCATAGAGATTTTTAGATAGATGCTGAGTTTGTTCGCTGGCTTCCATGGCTGCAATTAGCTGCATGTGTTTCCCGCCAACTGGCAACCCGGGTTGGCGAAATACTATTGGATAAATGGGCAACGTGCGGTCTTGCACAGACCAAAACAAAAACATAAATTCCGACACGGAACGCAAATTTCAAAGTAAAATAACTGGCTGTAGCAATGGTTTTCAGAGGAACGAATATGTGAACTCAGCATGTTTAATAAATATCTGCTAACATATTATGGTATTTTTATGCTTTAGTACAGTCAAAAACTTACATAGAGCACCTTTAACAAATTTTTAATATTTGATTACAGGGTGAAGATGTCAATTTTCCTAGACCGGGCATCACTTTTGGCCATTATTGTAGTGCATAAAATAAAAATCCACAAATTTTCTGTTATCTGTTAATCCTACCGAATGGACACTGTACGGAGGGATGTTTCTTGAAAGCAGTGAACATTTGAGAGCTAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17137 True 4580 lncRNA 0.35 3 4343888 4348581

Neighbor

gene id symbol gene type direction distance location
CI01000001_04328211_04330988 NA coding upstream 12836 4327576 ~ 4331052 (+)
CI01000001_04311013_04315588 NA coding upstream 28123 4311013 ~ 4315765 (+)
CI01000001_04296723_04300348 NA coding upstream 42913 4296601 ~ 4300975 (+)
CI01000001_04085864_04225894 PLXNA2 coding upstream 117994 4085864 ~ 4225894 (+)
CI01000001_03983212_04011240 NA coding upstream 332292 3983128 ~ 4011596 (+)
CI01000001_04369131_04373697 SNPHB, SNPH coding downstream 20550 4369131 ~ 4373972 (+)
CI01000001_04422037_04431229 NA coding downstream 73456 4422037 ~ 4432602 (+)
CI01000001_04433559_04437385 NA coding downstream 84978 4433559 ~ 4437450 (+)
CI01000001_04462781_04463560 NA coding downstream 114200 4462781 ~ 4464613 (+)
CI01000001_04543164_04553053 COMMD7 coding downstream 194037 4542618 ~ 4553673 (+)
G15288 NA non-coding upstream 69903 4240551 ~ 4273985 (+)
G15287 NA non-coding upstream 210364 4100122 ~ 4133524 (+)
G15313 NA non-coding upstream 234528 4103809 ~ 4109360 (+)
G15298 NA non-coding upstream 303135 4040302 ~ 4040753 (+)
G15245 NA non-coding upstream 362234 3981451 ~ 3981654 (+)
G15360 NA non-coding downstream 7635 4356216 ~ 4356616 (+)
G15370 NA non-coding downstream 133257 4481838 ~ 4486799 (+)
G15371 NA non-coding downstream 138339 4486920 ~ 4491381 (+)
G15404 NA non-coding downstream 217689 4566270 ~ 4566542 (+)
CI01000001_03618075_03620436 NA other upstream 722437 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2672884 1667762 ~ 1671167 (+)
G13051 NA other upstream 3298736 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3851831 483853 ~ 488825 (+)
G12614 NA other upstream 4032947 309144 ~ 310941 (+)
G15794 NA other downstream 712637 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 938168 5279837 ~ 5287698 (+)
G15995 NA other downstream 1363304 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3183991 7531541 ~ 7540586 (+)
G17234 NA other downstream 3683543 8032124 ~ 8032483 (+)

Expression


Co-expression Network