LOC122328869 (LOC107723021,LOC107694620,LOC107577481)


Basic Information

Item Value
gene id LOC122328869
gene name LOC107723021,LOC107694620,LOC107577481
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2129998 ~ 2132833 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU228267
AGCCGGGGTGTACGTGAGGCTGCGAGATCAGGGAGGAAAAGGGAAGTGGAAGAGGAAGGTAATTGGGGTGTTCTCTGGACACCAGTGGGTGGATGTTGACGGGATACAGAAGGACTATAACGTGGCAGTCAGAATAACACCCACCAAGTACGCCCAGATATGCCACTGGATCCATGGAGAGGCTAGTCAGTGTAAACTGGCCTGAATAAGGTCAAACGTCCTCAAGACTGCTGGGACGGTCTAGATGCAAACTGCTCATGTGTTCCACCTAATTGAAAACCTACAGTGAGTAGCTGAGAGCACAAATGGAGCATCTGTAcaggaaatgctgttttagcaaGATGAATTTGGatgctgtatatttatttttg
>XM_043224927.1
AGTGACTGCTGTCCGCTGGAGCGAGGTTTTCTCTCGTCGGGTTCATTTGAGGGTAAAGCAAGATGACCGTTCCTCCATCTTTGTTGTTCAGTCTGACAGCATTGGCTGTGGTTGCATTTTTGGTCAAAAGTGGTGCGTCTATCACAAACGATGAAGATGACTGCCTTTCGGCACGAATAAAGATCCCAGTGATCCTGGACCAAAGCACAGTGAGGCTTCAAAGCCCAGAATTCACTGCAGAACACTTCAGTGAGCCAGAAGTGATGTGCGGGATCGAGTGCCAAAGAAAGCTGCCAGAACCGAGGCCTGCGGAGCTGGAGCGGCTGCTGTCCTACGAAACAGTCTACGAGAACGGAACACGTACTCTCACCGAAATACAACTGGAAGAGGACGGCGAATTAAGAAACGCATCCTCTTCTGTCGTCTGCAACGCAGGACACCTTAAACGCAGAAAACGGCAGGTATACGGCATGGATGGACGCTTCGTGATCACAGATAAACACTACACCACCAATTACCCATTTTCTGCCTCAGTCAGGCTCTCTACAGGTTGCTCCGGCATTTTAGTTTCTCCAAAACACGTATTGACCTCTGCCCACTGCGTCCATGATGGCCAAGTCTATCTGAAAGGCACCAAGAAGCTGCGAGTGGGTGTCATGAAGCTTCGCTCCAAAAAACGCAGAGGAAACCAACGAGGAGGCaggaagagagggaaaaaagtgGGAAACGGACAAGACGTAGGAACTGACGAAGACCAACTTCATAGAGAACACAACCGGAAAAGAAAGAACCGTATTAGACGTAACACAGATTCAGATCAGTCCAGGCAACCGGTGTTCAGGTGGACACGTGTCAAACTAACACAAGTGCCAACAGGCTGGATGAGGAGAGAGGGCAAGGAGATCTCGGCTGACTATGACTACGCCCTCCTGGAGCTTAAACGACCCCACAAGATGAAGTTCATGGAGTTAGGAATCGTTCCTGTAGTCAAGGACATCCCAGCTGGGAGAATCCACTTCTCTGGTTTTGATGACGACCAATCGGGGAAGGTGGTCTACAGATTCTGTTCGGTCTTAGAAGAGTCCAATGACCTCATGTATCAGTACTGTGATGCGCAGAAGGGGTCAAGCGGAGCCGGGGTGTACGTGAGGCTGCGAGATCAGGGAGGAAAAGGGAAGTGGAAGAGGAAGGTAATTGGGGTGTTCTCTGGACACCAGTGGGTGGATGTTGACGGGATACAGAAGGACTATAACGTGGCAGTCAGAATAACACCCACCAAGTACGCCCAGATATGCCACTGGATCCATGGAGAGGCTAGTCAGTGTAAACTGGCCTGAATAAGGTCAAACGTCCTCAAGACTGCTGGGACGGTCTAGATGCAAACTGCTCATGTGTTCCACCTAATTGAAAACCTACAGTGAGTAGCTGAGAGCACAAATGGAGCATCTGTAcaggaaatgctgttttagcaaGATGAATTTGGatgctgtatatttatttttgttttccttgcCAAAATTTGAGACTGTAGCCTTTGTAATGTCATGTTCAGGCCATGTTTGTGTTAAAAAGCCAATATCACCAGCTGAGGCCAAGTAGTTAactactgaaaaacaaaacagcttgaCATTCAGTATGATTTTTGTTTAAGTTCTCGGggagttcacccaaatatgaaaaatatcacCAGCTGCATGAGGAAGAGCCCGTTTTCCATAAAGGAAGAGTACATGGCGGTTCATACTACCTCTGAAAAGAAGTGGGAGGATTATTTGCTTACAGTAAGAATAAGGTGCACAAGTGATATGGACTATTATGCGTTTTAAAGCCTGGCAGTATAAATCACTATGCAGTAGCTTAGACATTCAAGCT

Function

NR:

description
PREDICTED: inactive serine protease 35-like

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228267 False 371 lncRNA 0.48 1 2132094 2132464
XM_043224927.1 True 1872 mRNA 0.47 2 2129998 2132833

Neighbor

gene id symbol gene type direction distance location
LOC122328881 NA coding upstream 27317 2088312 ~ 2102681 (+)
LOC122328839 LOC107549167,LOC107723011 coding upstream 42579 2071739 ~ 2087419 (+)
zhx3b zhx3,LOC107663202,LOC107747727,LOC107703618,LOC107713571,LOC107562626,LOC107557488 coding upstream 177870 1941304 ~ 1952128 (+)
rnf114 rnf114,LOC107713569,LOC107724213 coding upstream 472415 1652564 ~ 1657583 (+)
pacsin1a pacsin1a,LOC107680734,LOC107738788,LOC107678076,LOC107571226,LOC107557481,LOC108276336 coding upstream 582113 1520315 ~ 1547885 (+)
ndnf ndnf,LOC107549170,LOC107723023,LOC107698518,LOC107558793,LOC107710242,LOC107669702 coding downstream 155148 2287981 ~ 2304033 (+)
slc34a2b LOC107698513,LOC107570774,LOC107669705,LOC107710230 coding downstream 318857 2451690 ~ 2461440 (+)
psmb11b LOC107549161,LOC107719954,LOC103370428,LOC105925323,LOC102212057 coding downstream 346826 2479659 ~ 2483007 (+)
trnal-uaa_38 NA coding downstream 353260 2486093 ~ 2486175 (+)
LOC122328832 utrn,LOC107669681,LOC107570770,LOC107710234,LOC107718008,LOC107549160,LOC108411446,LOC108275814 coding downstream 355886 2488719 ~ 2656582 (+)
G154156 LOC107558790,LOC107669693 non-coding upstream 18665 2109393 ~ 2111333 (+)
G154155 NA non-coding upstream 21426 2108334 ~ 2108572 (+)
G154130 LOC107557491,LOC107723017,LOC107663200 non-coding upstream 106854 2005332 ~ 2023144 (+)
G154122 NA non-coding upstream 134842 1994093 ~ 1995156 (+)
G154074 NA non-coding upstream 323911 1805663 ~ 1806087 (+)
G154146 tcp1,LOC107669696,LOC107549175,LOC107558788,LOC107694622 non-coding downstream 177 2133010 ~ 2133923 (+)
G154207 cpeb2,LOC108276376 non-coding downstream 83156 2215989 ~ 2249553 (+)
G154230 NA non-coding downstream 139040 2271873 ~ 2274863 (+)
G154285 NA non-coding downstream 524541 2657374 ~ 2657685 (+)
G154365 NA non-coding downstream 664294 2797127 ~ 2797837 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 58599 2068668 ~ 2071399 (+)
snai1b LOC107694621,LOC107723015,LOC107549169,LOC107558792,LOC107738552,LOC107669687 other upstream 76023 2050032 ~ 2053975 (+)
G154108 plcg1 other upstream 164881 1964273 ~ 1965117 (+)
G154092 NA other upstream 175315 1952171 ~ 1954683 (+)
mafba mafba,LOC107680735,LOC107562627,LOC107557486,LOC107703617,LOC107713570 other upstream 425422 1699034 ~ 1704576 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other downstream 179889 2312722 ~ 2356727 (+)
G154424 NA other downstream 790549 2923382 ~ 2956725 (+)
LOC122329169 NA other downstream 792475 2925308 ~ 2943806 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 862336 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 927676 3060509 ~ 3097035 (+)

Expression


Co-expression Network