G154195 (LOC107710236)


Basic Information

Item Value
gene id G154195
gene name LOC107710236
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2092748 ~ 2095915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU228327
CAGTTGACTCTGTGGACTGTTCTCTCTATCCTGCAGGTTATTGTTAGTCAGGTCTAGCTCTCTCAGAAGAGAGTCCGGTGATTGTAGAATTGAGAACACAATGTCACAGCACTCAGCAGTGAGGTTACAGCCTGCAAGTCTACCTTTTCTGCAGTTGCTCACAGCTGGTAAAAGTCGTCTTCTACCCTCATCTGTTGTGTTGTATTTCTTAAGGTCGAGCTCATCCAGAACCTCCTCTGACATTTGAAGCATGTAAGCTATTGCTGAGCAGTGAGCAGGAGAGAGTTTATTCTTTGAGTGTTTGTCTGATTTCACAAAGTCCTGAATCTCTCTGTACAGAGTCTGATCCTTCATTTCAAGCAGACAGAGGAGCAATATAATAGATTTTCTAGCAAAGAGATTACGTCCATctttaattttgtctttaatgtactgtgtaatatttgtaatgctCTCCGAGCTGTTCACTGTTCCTATCAATAAATCTTCAaagagtctctgattggactCCAGTGAGATGCCTAGGAGGAATCTGATGAAAAGATCTAGTTGTCCATTTTCACTCTCAAGGGTTTTATAAACAGCTGTTTTTAGTAGTTCACACAGAGATTTGTACTCAGACCTGTACCTTTCATAATTATGACCCAAAAATAACTGCAGTAATCTTGTGTtctggactacatgggagaagAACACACAGAAAGCCGCAAGAAACTCCTGAAAGCTCAGATGTATGAAGCTATAGACCTTTCTCTGATGAATGACAGATTCCTCCTTGAAGATCTCAGTGcaaatcccagaatacactgaGGCATCAGTGACATCTATGCCGCTCTCAATCAGGTCCTCCTCATAGAACATCACATTGCCCTTCATCAACTGTTTGAAAGCTAGTTCAGCAAGTTTCACAATCATTTCTCTATTTGACTTTAGGATCTTCTCTGAATCCTTCTCTTCATATTTCTGATTCCTTGTATTAATTTGACTTAGCAGGAAAtggatgtacatttcagtaAGAGTTTTGGGGATTTCTGCACTGTCATTGTGGTTCAGGTGGTTTTGAAGCACAGTGGCtaagatccagcagaagacagggatgtggcacatgatgtagagGCTTCTTGATCTTTTGATATGGGAGATGATTCTGCTGGCTTGATGTTCATCACTGattcttttcttaaaatattcttCCTTCTGAGACTCATTGAATCCCTGTATTTCTGTCAAGCGGTTGATGTATTGGGAGGGGATCCGTTTGGCTGCTGcaggtctggaggtgatccagatgtgAGAACAAGGAAGAAGATCTCCTTTTATGAGGTTTGTTATCAACACACTGACAGATGAAATCTCAGTAACATCAGAAGCTTTCTCAGTGTCTGAAAAGTTCATTGCAATTCTGCTTtcgtccagaccatcaaagatgaacacaactttaCACTCCTCATAAATCTCTGAATCCAGATCATGAAGTTCAGGATAAAAGTCCAGCAATAGTCTGTGAAGACTGTACTGATGCTCTTCaatcaagttcagctctcgaaatggaagcacaaacatgaaatctacatcctgattggcttttccctcGGCCCAAtccagaatgaacttctgcacagagaccgtttttccaattccagcaatgcctttagtaagaacagcctttatttgtttttttccctcacatCCTGAATGATGCAATGgtttaaatatatcattgcaAAGGATTGGAGTGTCTTGTGAGGGCTGTGTTTTGGGATTTTTCTCAATCTGTACAATCTCATGTTCTTCATTGACTCCTTCACTCTCTCCTTCTATGATgtagagctctgtgtagatcCTGTTCAGAAGGGTTTGATTCTTTTGTGTGATTCCTTCAAATAAGGTCTCATATTTGTTCTTCATGCATGTTTTGTGAGTGTCTTTTATTCTTTGTTGTATGATGTTGATCTCCACTAAGGAAGTGGTTAGATGATTCACAGATTTCACTAGATCGTTGCGT

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228327 True 2005 lncRNA 0.40 2 2092748 2095915

Neighbor

gene id symbol gene type direction distance location
LOC122328403 tp53inp2,LOC107668420,LOC107738544,LOC107669700,LOC107723009,LOC107558791 coding downstream 54412 2029050 ~ 2038336 (-)
LOC122328402 ggt7,LOC107557492,LOC107558798,LOC107668417,LOC107669686,LOC107723008 coding downstream 64249 2018370 ~ 2028499 (-)
ncoa6 LOC107663200,LOC107557491,LOC107723017 coding downstream 74890 2004331 ~ 2017858 (-)
zgc:114123 LOC107723025,LOC107663206,LOC107557489 coding downstream 89151 1998699 ~ 2003597 (-)
top1b top1,LOC107562625,LOC107703620,LOC103147358,LOC107087615,LOC102223196,LOC106964922 coding downstream 96743 1982649 ~ 1996005 (-)
tcp1 tcp1,LOC107694622,LOC107669694 coding upstream 37121 2133036 ~ 2139275 (-)
LOC122328830 LOC107723018,LOC107710237,LOC107669689,LOC107558796 coding upstream 44917 2140832 ~ 2182009 (-)
cc2d2a cc2d2a coding upstream 118473 2214388 ~ 2233588 (-)
LOC122328872 c1qtnf7,LOC107670563,LOC107549168,LOC107723016,LOC107669695,LOC107710240 coding upstream 138916 2234831 ~ 2240651 (-)
cpeb2 cpeb2,LOC107723019 coding upstream 149825 2245740 ~ 2268907 (-)
G154194 NA non-coding downstream 13252 2077564 ~ 2079496 (-)
G154188 NA non-coding downstream 46204 2046323 ~ 2046544 (-)
G154077 NA non-coding downstream 283743 1808555 ~ 1809005 (-)
G154064 NA non-coding downstream 376777 1715243 ~ 1715971 (-)
G154061 NA non-coding downstream 380706 1711732 ~ 1712042 (-)
G154200 NA non-coding upstream 869 2096784 ~ 2097008 (-)
LOC122328884 NA non-coding upstream 3339 2099254 ~ 2102158 (-)
G154245 NA non-coding upstream 192352 2288267 ~ 2288503 (-)
G154246 NA non-coding upstream 204340 2300255 ~ 2300566 (-)
G154247 ndnf,LOC107549170,LOC107723023,LOC107698518,LOC107710242,LOC107558793 non-coding upstream 205695 2301610 ~ 2304408 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other downstream 580419 1507698 ~ 1512329 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 1027974 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 1210564 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 1306869 779085 ~ 785879 (-)
LOC122328833 LOC107669693 other upstream 6795 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 673567 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 691381 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 773703 2869618 ~ 2874758 (-)
G154446 NA other upstream 829133 2925048 ~ 2957272 (-)

Expression


Co-expression Network